Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GZ59_RS17900 Genome accession   NZ_CP009125
Coordinates   4047546..4048109 (+) Length   187 a.a.
NCBI ID   WP_011095190.1    Uniprot ID   -
Organism   Pectobacterium atrosepticum strain 21A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4042546..4053109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ59_RS17885 (GZ59_37250) vapB 4042904..4043131 (-) 228 WP_011095187.1 type II toxin-antitoxin system VapB family antitoxin -
  GZ59_RS17890 (GZ59_37330) - 4044029..4044448 (-) 420 WP_011095188.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GZ59_RS17895 (GZ59_37340) uvrA 4044466..4047300 (-) 2835 WP_039293545.1 excinuclease ABC subunit UvrA -
  GZ59_RS17900 (GZ59_37350) ssb 4047546..4048109 (+) 564 WP_011095190.1 single-stranded DNA-binding protein Machinery gene
  GZ59_RS17905 (GZ59_37360) - 4048355..4050211 (+) 1857 WP_039293548.1 amidohydrolase -
  GZ59_RS17910 (GZ59_37370) - 4050406..4050861 (+) 456 WP_011095192.1 GNAT family N-acetyltransferase -
  GZ59_RS17915 (GZ59_37380) - 4050929..4051519 (+) 591 WP_039293551.1 hypothetical protein -
  GZ59_RS17920 (GZ59_37390) - 4051640..4052071 (-) 432 WP_011095193.1 carboxymuconolactone decarboxylase family protein -
  GZ59_RS17925 (GZ59_37400) - 4052212..4052643 (-) 432 WP_039293554.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19726.69 Da        Isoelectric Point: 5.2456

>NTDB_id=126995 GZ59_RS17900 WP_011095190.1 4047546..4048109(+) (ssb) [Pectobacterium atrosepticum strain 21A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQPQGGWGQPQQPQGGNQFSGGAQAQQRPA
QNASSSQNNAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=126995 GZ59_RS17900 WP_011095190.1 4047546..4048109(+) (ssb) [Pectobacterium atrosepticum strain 21A]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTTGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTAGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCCAC
AAGGCGGCTGGGGTCAACCTCAGCAACCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCAGCT
CAGAACGCATCTTCCTCACAAAATAATGCCCCGGCACAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCTTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.429

100

0.722
  ssb Glaesserella parasuis strain SC1401

55.208

100

0.567
  ssb Neisseria meningitidis MC58

44.974

100

0.455
  ssb Neisseria gonorrhoeae MS11

44.974

100

0.455
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.158

97.861

0.364

Multiple sequence alignment