Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ID12_RS11465 Genome accession   NZ_CP009108
Coordinates   2282075..2282536 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GR-8     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2277075..2287536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS11445 (ID12_11910) - 2277479..2278363 (+) 885 WP_048001615.1 cation diffusion facilitator family transporter -
  ID12_RS19370 - 2278428..2278580 (-) 153 WP_008348040.1 hypothetical protein -
  ID12_RS11450 (ID12_11920) - 2278881..2279420 (+) 540 WP_007498690.1 RDD family protein -
  ID12_RS11455 (ID12_11925) - 2279545..2280855 (+) 1311 WP_017359426.1 MFS transporter -
  ID12_RS11460 (ID12_11930) - 2280929..2281837 (+) 909 WP_008348035.1 chemotaxis protein -
  ID12_RS11465 (ID12_11935) kre 2282075..2282536 (-) 462 WP_008356877.1 YkyB family protein Regulator
  ID12_RS11470 (ID12_11945) - 2283013..2283228 (-) 216 WP_048001613.1 hypothetical protein -
  ID12_RS19375 - 2283396..2283572 (+) 177 WP_008348014.1 hypothetical protein -
  ID12_RS11475 (ID12_11955) - 2283800..2285077 (-) 1278 WP_008348012.1 MFS transporter -
  ID12_RS11480 (ID12_11960) - 2285151..2285648 (-) 498 WP_019743906.1 L,D-transpeptidase family protein -
  ID12_RS11485 (ID12_11965) - 2285805..2286662 (-) 858 WP_039963342.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=126869 ID12_RS11465 WP_008356877.1 2282075..2282536(-) (kre) [Bacillus altitudinis strain GR-8]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=126869 ID12_RS11465 WP_008356877.1 2282075..2282536(-) (kre) [Bacillus altitudinis strain GR-8]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCAAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment