Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   WV34_RS13210 Genome accession   NZ_CP011252
Coordinates   2610679..2611374 (-) Length   231 a.a.
NCBI ID   WP_013353063.1    Uniprot ID   A0A9P1JJ48
Organism   Bacillus amyloliquefaciens strain MT45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2605679..2616374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS13180 (WV34_12835) - 2605693..2606496 (-) 804 WP_088613204.1 M23 family metallopeptidase -
  WV34_RS13185 (WV34_12840) minD 2606625..2607428 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  WV34_RS13190 (WV34_12845) minC 2607431..2608111 (-) 681 WP_013353059.1 septum site-determining protein MinC -
  WV34_RS13195 (WV34_12850) mreD 2608165..2608683 (-) 519 WP_088613205.1 rod shape-determining protein MreD -
  WV34_RS13200 (WV34_12855) mreC 2608680..2609543 (-) 864 WP_013353061.1 rod shape-determining protein MreC -
  WV34_RS13205 (WV34_12860) mreB 2609574..2610587 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  WV34_RS13210 (WV34_12865) ysxA/radC 2610679..2611374 (-) 696 WP_013353063.1 DNA repair protein RadC Machinery gene
  WV34_RS13215 (WV34_12870) - 2611406..2611975 (-) 570 WP_065522626.1 Maf family protein -
  WV34_RS13220 (WV34_12875) - 2612117..2613118 (-) 1002 WP_088613206.1 SPOR domain-containing protein -
  WV34_RS13225 (WV34_12880) comC 2613245..2613997 (-) 753 WP_088613207.1 A24 family peptidase Machinery gene
  WV34_RS13230 (WV34_12885) - 2614137..2615429 (-) 1293 WP_088613208.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26066.29 Da        Isoelectric Point: 8.9381

>NTDB_id=126830 WV34_RS13210 WP_013353063.1 2610679..2611374(-) (ysxA/radC) [Bacillus amyloliquefaciens strain MT45]
MIIRDLPLKLRDFPEKEKPRERLLHCGAEHLSNNELLAILLRTGTKHESVMNLSHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTIFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=126830 WV34_RS13210 WP_013353063.1 2610679..2611374(-) (ysxA/radC) [Bacillus amyloliquefaciens strain MT45]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCATTGCGG
GGCCGAACATCTTTCTAACAATGAATTGCTCGCCATCTTGCTGAGGACGGGAACGAAACATGAGTCCGTCATGAATCTCT
CTCACCGGCTGCTGAGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCTTCTGCCCAGGAGCTTTCCAGCATCCCCGGA
ATCGGCACGGTGAAAGCCGTTCAGATCCTTGCTGCAATTGAGCTGGGGAGCCGTATTCATAAGACATCCGCCGGAGAGCA
TTGCGTCATCCGTTCTCCCGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCATTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
CACACCGAGCAGGGAAGATATAGAAGTAACTAGACGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JJ48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429

Multiple sequence alignment