Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   WV34_RS13090 Genome accession   NZ_CP011252
Coordinates   2590173..2591177 (-) Length   334 a.a.
NCBI ID   WP_045510296.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2585173..2596177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS13060 (WV34_12715) - 2586200..2586856 (-) 657 WP_013353038.1 DUF421 domain-containing protein -
  WV34_RS13065 (WV34_12720) - 2587023..2587409 (+) 387 WP_065522676.1 TIGR04086 family membrane protein -
  WV34_RS13070 (WV34_12725) yajC 2587461..2587721 (-) 261 WP_003152695.1 preprotein translocase subunit YajC -
  WV34_RS13075 (WV34_12730) tgt 2587753..2588898 (-) 1146 WP_045510306.1 tRNA guanosine(34) transglycosylase Tgt -
  WV34_RS13080 (WV34_12735) queA 2588926..2589954 (-) 1029 WP_088613192.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  WV34_RS13085 (WV34_12740) - 2589980..2590180 (-) 201 WP_088613193.1 DUF2905 domain-containing protein -
  WV34_RS13090 (WV34_12745) ruvB 2590173..2591177 (-) 1005 WP_045510296.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  WV34_RS13095 (WV34_12750) ruvA 2591188..2591793 (-) 606 WP_003152683.1 Holliday junction branch migration protein RuvA Machinery gene
  WV34_RS13100 (WV34_12755) - 2591928..2592404 (-) 477 WP_038463270.1 intercompartmental signaling factor BofC -
  WV34_RS13105 (WV34_12760) - 2592814..2593407 (-) 594 WP_014470776.1 YhcN/YlaJ family sporulation lipoprotein -
  WV34_RS13110 (WV34_12765) safA 2593556..2594707 (-) 1152 WP_088613194.1 spore coat assembly protein SafA -
  WV34_RS13115 (WV34_12770) nadA 2594834..2595937 (-) 1104 WP_088613195.1 quinolinate synthase NadA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37186.45 Da        Isoelectric Point: 4.6668

>NTDB_id=126828 WV34_RS13090 WP_045510296.1 2590173..2591177(-) (ruvB) [Bacillus amyloliquefaciens strain MT45]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTAEVFEVDIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPACD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=126828 WV34_RS13090 WP_045510296.1 2590173..2591177(-) (ruvB) [Bacillus amyloliquefaciens strain MT45]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAACCTCGC
CCAGTACATCGGGCAGCAGAAGGTAAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTTG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGAAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGCCCCGCTATCGAAAGACCGGGAGACTTGGCAGCCATTCTGACGGCGCTCGAACCCGGGGATGT
GCTGTTTATAGACGAAATTCACAGACTGAACCGGTCAATCGAAGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGTAAAGGCCCGTCCGCCCGCTCCGTCCGCCTTGACCTTCCGCCTTTTACGCTGGTAGGAGCGACGACC
AGGGTCGGCTTATTGACCGCGCCGCTCAGAGACCGGTTCGGGGTGCTGTCCCGCCTTGAATACTATACGCAGGAAGAACT
GACAGATATCGTGTCAAGAACGGCTGAAGTATTTGAAGTTGATATCGAAGAAGCCCCGGCTTTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTAGGTGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGACGCGCTCGGCCTTGACCATATTGACCATAAGCTGCT
GATGGGCATGATTGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGTGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTTCAGATCGGATTTCTCCAAAGGACGCCGAGAGGACGGGTCGTGACCCCG
GCCGTGTATGAGCATTTTCGATTGGAGGCACCCGCCTGTGACTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

91.617

100

0.916
  ruvB Streptococcus pneumoniae TIGR4

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae R6

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae D39

60.429

97.605

0.59
  ruvB Synechocystis sp. PCC 6803

58.359

98.503

0.575
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518

Multiple sequence alignment