NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	WV34_RS13095	Genome accession	NZ_CP011252
Coordinates	2591188..2591793 (-)	Length	201 a.a.
NCBI ID	WP_003152683.1	Uniprot ID	A7Z769
Organism	Bacillus amyloliquefaciens strain MT45
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2586188..2596793

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WV34_RS13060 (WV34_12715)	-	2586200..2586856 (-)	657	WP_013353038.1	DUF421 domain-containing protein	-
WV34_RS13065 (WV34_12720)	-	2587023..2587409 (+)	387	WP_065522676.1	TIGR04086 family membrane protein	-
WV34_RS13070 (WV34_12725)	yajC	2587461..2587721 (-)	261	WP_003152695.1	preprotein translocase subunit YajC	-
WV34_RS13075 (WV34_12730)	tgt	2587753..2588898 (-)	1146	WP_045510306.1	tRNA guanosine(34) transglycosylase Tgt	-
WV34_RS13080 (WV34_12735)	queA	2588926..2589954 (-)	1029	WP_088613192.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
WV34_RS13085 (WV34_12740)	-	2589980..2590180 (-)	201	WP_088613193.1	DUF2905 domain-containing protein	-
WV34_RS13090 (WV34_12745)	ruvB	2590173..2591177 (-)	1005	WP_045510296.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
WV34_RS13095 (WV34_12750)	ruvA	2591188..2591793 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
WV34_RS13100 (WV34_12755)	-	2591928..2592404 (-)	477	WP_038463270.1	intercompartmental signaling factor BofC	-
WV34_RS13105 (WV34_12760)	-	2592814..2593407 (-)	594	WP_014470776.1	YhcN/YlaJ family sporulation lipoprotein	-
WV34_RS13110 (WV34_12765)	safA	2593556..2594707 (-)	1152	WP_088613194.1	spore coat assembly protein SafA	-
WV34_RS13115 (WV34_12770)	nadA	2594834..2595937 (-)	1104	WP_088613195.1	quinolinate synthase NadA	-
WV34_RS13120 (WV34_12775)	nadC	2595937..2596785 (-)	849	WP_088613196.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22414.85 Da Isoelectric Point: 5.1597

                                >NTDB_id=126829 WV34_RS13095 WP_003152683.1 2591188..2591793(-) (ruvA) [Bacillus amyloliquefaciens strain MT45]

MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL

EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=126829 WV34_RS13095 WP_003152683.1 2591188..2591793(-) (ruvA) [Bacillus amyloliquefaciens strain MT45]

GTGATTGAATTCGTGAAGGGGACGATTGATTACGTATCGCCCCAATACATCGTGATTGAAAACGGCGGGATCGGCTATCA

GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG

CCTTTTCTTTGTACGGCTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAATGTCACCGGCATCGGTCCG

AAAGGGGCGCTCGCCATTCTCGGTTCCGGTGATCCGGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT

GGTGAAATTTCCGGGTGTGGGCAAAAAGACGGCGCGGCAGATTATTCTTGATTTAAAAGGCAAACTGGCCGATGTCGTGC

CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAAGCGCTT

GAAGCGCTCAGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC

AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A7Z769

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408

Detailed information NTG0126829