Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AMD07_RS02085 Genome accession   NZ_CP009037
Coordinates   412969..414489 (-) Length   506 a.a.
NCBI ID   WP_015471472.1    Uniprot ID   -
Organism   Xanthomonas citri pv. citri strain AW15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 407969..419489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD07_RS02065 (J167_00419) - 408563..409684 (+) 1122 WP_011052636.1 acyl-CoA desaturase -
  AMD07_RS02070 (J167_00420) - 409750..411312 (-) 1563 WP_011052635.1 EAL domain-containing protein -
  AMD07_RS25950 (J167_00421) - 411695..411871 (+) 177 WP_003486502.1 hypothetical protein -
  AMD07_RS02080 (J167_00422) - 412117..412626 (-) 510 WP_015471471.1 lipocalin family protein -
  AMD07_RS02085 (J167_00423) comM 412969..414489 (-) 1521 WP_015471472.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AMD07_RS02090 (J167_00424) - 414505..414786 (-) 282 WP_003486493.1 accessory factor UbiK family protein -
  AMD07_RS02095 (J167_00425) - 414941..415315 (+) 375 WP_191480812.1 P-II family nitrogen regulator -
  AMD07_RS02100 (J167_00426) - 415799..417784 (+) 1986 WP_015471473.1 beta-N-acetylglucosaminidase domain-containing protein -
  AMD07_RS02105 (J167_00427) - 417988..418644 (-) 657 WP_015463693.1 RIO1 family regulatory kinase/ATPase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53882.59 Da        Isoelectric Point: 8.5235

>NTDB_id=126214 AMD07_RS02085 WP_015471472.1 412969..414489(-) (comM) [Xanthomonas citri pv. citri strain AW15]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHNDQVLLERAIEQLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=126214 AMD07_RS02085 WP_015471472.1 412969..414489(-) (comM) [Xanthomonas citri pv. citri strain AW15]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTACGCGCTGCCCTGC
TATGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGTGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGAGGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAACCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCCGGTTGCGGCAAGACGCTGCTGGCTTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCAATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAATGGCAACGGCAAACCCTGGAAGTCTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGTGGTGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACAACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACAGCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGCGCA
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.324

100

0.563
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Glaesserella parasuis strain SC1401

54.241

100

0.543
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

51.911

98.221

0.51
  comM Legionella pneumophila strain ERS1305867

51.911

98.221

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.458

Multiple sequence alignment