Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AMD20_RS20250 Genome accession   NZ_CP009010
Coordinates   4599640..4601160 (+) Length   506 a.a.
NCBI ID   WP_015463694.1    Uniprot ID   A0A7S7C1B3
Organism   Xanthomonas citri pv. citri strain JX5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4594640..4606160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD20_RS20230 (J157_04084) - 4595485..4596141 (+) 657 WP_015463693.1 RIO1 family regulatory kinase/ATPase -
  AMD20_RS20235 (J157_04085) - 4596345..4598330 (-) 1986 WP_011052611.1 beta-N-acetylglucosaminidase domain-containing protein -
  AMD20_RS20240 (J157_04086) - 4598814..4599188 (-) 375 WP_191480812.1 P-II family nitrogen regulator -
  AMD20_RS20245 (J157_04087) - 4599343..4599624 (+) 282 WP_003486493.1 accessory factor UbiK family protein -
  AMD20_RS20250 (J157_04088) comM 4599640..4601160 (+) 1521 WP_015463694.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AMD20_RS20255 (J157_04089) - 4601503..4602012 (+) 510 WP_015471471.1 lipocalin family protein -
  AMD20_RS25155 (J157_04090) - 4602252..4602428 (-) 177 WP_003486502.1 hypothetical protein -
  AMD20_RS20265 (J157_04091) - 4602811..4604373 (+) 1563 WP_011052635.1 EAL domain-containing protein -
  AMD20_RS20270 (J157_04092) - 4604439..4605560 (-) 1122 WP_011052636.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53866.59 Da        Isoelectric Point: 8.5235

>NTDB_id=126081 AMD20_RS20250 WP_015463694.1 4599640..4601160(+) (comM) [Xanthomonas citri pv. citri strain JX5]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHNDQVLLERAIEQLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=126081 AMD20_RS20250 WP_015463694.1 4599640..4601160(+) (comM) [Xanthomonas citri pv. citri strain JX5]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTACGCGCTGCCCTGC
TATGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGTGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGAGGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAACCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCCGGTTGCGGCAAGACGCTGCTGGCTTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCAATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAATGGCAACGGCAAACCCTGGAAGTCTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGTGGTGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACAACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACAGCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCGCA
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7C1B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

54.99

100

0.555
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.71

98.221

0.508
  comM Legionella pneumophila strain ERS1305867

51.71

98.221

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.472

100

0.457

Multiple sequence alignment