Detailed information NTG0125528

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: HZ99_RS16435
• Genome accession: NZ_CP008896
• Coordinates: 3657836..3658759 (+)
• Length: 307 a.a.
• NCBI ID: WP_258869336.1
• Uniprot ID: A0A379IMS2
• Organism: Pseudomonas fluorescens strain UK4
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3652836..3663759

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZ99_RS16415	-	3653484..3655232 (+)	1749	WP_051903168.1	recombinase family protein	-
HZ99_RS16420 (HZ99_16800)	-	3655701..3656246 (-)	546	WP_038444444.1	recombinase family protein	-
HZ99_RS16425	-	3656463..3656972 (-)	510	WP_051903171.1	OB-fold protein	-
HZ99_RS16430 (HZ99_16810)	-	3657069..3657548 (-)	480	WP_038444445.1	hypothetical protein	-
HZ99_RS16435	comM	3657836..3658759 (+)	924	WP_258869336.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HZ99_RS16440 (HZ99_16820)	-	3658810..3660786 (-)	1977	WP_038444447.1	methyl-accepting chemotaxis protein	-
HZ99_RS16445 (HZ99_16825)	-	3660976..3661896 (-)	921	WP_038444449.1	LysR substrate-binding domain-containing protein	-
HZ99_RS16450 (HZ99_16830)	-	3662049..3663416 (+)	1368	WP_038444450.1	NorM family multidrug efflux MATE transporter	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 33887.90 Da
• Isoelectric Point: 8.0824

>NTDB_id=125528 HZ99_RS16435 WP_258869336.1 3657836..3658759(+) (comM) [Pseudomonas fluorescens strain UK4]
MFYVGFQEVFRAISECFVSIHNLLLSGPPGTGKTLLASRLPGLLPPLSKQEALEVAAIQSVVSLAPLCHWPHRPFRQPHH
SASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLESGHIVISRARDRVSFPARFQLVAAMNPCPCGY
MGEPSGRCRCTPEQIQRYRNKLSGPLLDRVDLHLTVARESTALNPARQTGDDTASASRRVAEARERQQNRQGCANAFLDL
PGLREHCPLEKVDESWLESACERLTLSLRAAHRLLKVARTLADLEQADAIARHHLLEALQYRPAAIT

Nucleotide

• Length: 924 bp

>NTDB_id=125528 HZ99_RS16435 WP_258869336.1 3657836..3658759(+) (comM) [Pseudomonas fluorescens strain UK4]
ATGTTTTATGTGGGTTTTCAGGAGGTTTTTCGAGCAATTTCAGAATGTTTTGTATCAATACACAACCTGTTGCTCAGCGG
GCCGCCCGGTACCGGCAAGACGTTGCTGGCCAGCCGCCTGCCGGGATTGCTGCCACCGTTGAGCAAACAGGAAGCCCTGG
AAGTCGCGGCGATCCAATCGGTCGTCAGTCTCGCCCCCCTGTGCCACTGGCCCCACCGGCCCTTTCGCCAGCCGCACCAT
TCCGCGTCCGGGCCAGCGTTGGTGGGTGGCGGTTCGAAACCGCAACCCGGGGAAATCACCCTGGCCCACCATGGGGTGTT
GTTTCTCGATGAGCTGCCGGAATTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAACCACTGGAATCGGGGCATATCGTGA
TTTCTCGGGCGCGCGACCGTGTGAGCTTCCCTGCACGGTTTCAACTGGTGGCAGCGATGAACCCCTGCCCTTGCGGTTAC
ATGGGCGAGCCCAGTGGGCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTCTCGGGGCCGTTGCT
GGACCGGGTTGACCTACACCTCACAGTCGCACGGGAAAGCACAGCGTTGAATCCCGCCCGACAAACCGGCGACGACACCG
CCAGCGCTTCGCGCCGTGTCGCCGAGGCGCGTGAGCGCCAGCAAAATCGTCAGGGTTGTGCGAATGCGTTTCTCGACCTG
CCAGGCTTGCGCGAGCACTGCCCGTTAGAGAAAGTCGATGAAAGTTGGCTCGAGAGCGCCTGCGAACGCCTGACGCTATC
CCTGCGGGCGGCACACCGGTTGCTCAAGGTGGCGCGGACCTTGGCAGACCTTGAGCAAGCGGATGCCATCGCTCGTCACC
ATCTGCTGGAAGCACTGCAATACCGACCTGCTGCAATCACTTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (212-302)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (7-200)

3D structure

• AlphaFold DB: A0A379IMS2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	53.821	98.046	0.528
comM	Glaesserella parasuis strain SC1401	53.135	98.697	0.524
comM	Vibrio campbellii strain DS40M4	52.824	98.046	0.518
comM	Haemophilus influenzae Rd KW20	52.649	98.371	0.518
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	48.658	97.068	0.472
comM	Legionella pneumophila str. Paris	49.825	92.834	0.463
comM	Legionella pneumophila strain ERS1305867	49.825	92.834	0.463