Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VAB027_RS12950 Genome accession   NZ_CP010812
Coordinates   2790396..2790707 (-) Length   103 a.a.
NCBI ID   WP_001166106.1    Uniprot ID   A0AAU8WU30
Organism   Vibrio cholerae strain 10432-62     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2785396..2795707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS12925 (VAB027_2556) lapB 2785589..2786758 (-) 1170 WP_046126898.1 lipopolysaccharide assembly protein LapB -
  VAB027_RS12930 (VAB027_2557) - 2786770..2787051 (-) 282 WP_033928657.1 LapA family protein -
  VAB027_RS12935 (VAB027_2558) ihfB 2787190..2787468 (-) 279 WP_000167341.1 integration host factor subunit beta -
  VAB027_RS12940 (VAB027_2559) rpsA 2787757..2789427 (-) 1671 WP_000140318.1 30S ribosomal protein S1 -
  VAB027_RS12945 (VAB027_2560) cmk 2789536..2790213 (-) 678 WP_000094752.1 (d)CMP kinase -
  VAB027_RS12950 (VAB027_2561) comEA 2790396..2790707 (-) 312 WP_001166106.1 ComEA family DNA-binding protein Machinery gene
  VAB027_RS12955 (VAB027_2562) ppiD 2790842..2792701 (-) 1860 WP_046126899.1 peptidylprolyl isomerase -
  VAB027_RS12960 (VAB027_2563) - 2792854..2793126 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  VAB027_RS12965 (VAB027_2564) lon 2793310..2795670 (-) 2361 WP_001047611.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10957.76 Da        Isoelectric Point: 4.7228

>NTDB_id=124526 VAB027_RS12950 WP_001166106.1 2790396..2790707(-) (comEA) [Vibrio cholerae strain 10432-62]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTQI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=124526 VAB027_RS12950 WP_001166106.1 2790396..2790707(-) (comEA) [Vibrio cholerae strain 10432-62]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCACAGGTAGAAGAAGGTATTGTGATCACTGTCAACATCAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAAAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCAAATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAU8WU30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

99.029

100

0.99
  comEA Vibrio cholerae strain A1552

99.029

100

0.99
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437

Multiple sequence alignment