Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   VAB027_RS12605 Genome accession   NZ_CP010812
Coordinates   2708892..2709896 (-) Length   334 a.a.
NCBI ID   WP_000568491.1    Uniprot ID   Q9KR02
Organism   Vibrio cholerae strain 10432-62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2703892..2714896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS12575 (VAB027_2481) tolQ 2704014..2704697 (-) 684 WP_000123083.1 protein TolQ -
  VAB027_RS12580 (VAB027_2482) ybgC 2704687..2705094 (-) 408 WP_001091290.1 tol-pal system-associated acyl-CoA thioesterase -
  VAB027_RS12585 (VAB027_2483) ybgE 2705263..2705580 (-) 318 WP_046126878.1 cyd operon protein YbgE -
  VAB027_RS12590 (VAB027_2484) cydX 2705573..2705680 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  VAB027_RS12595 (VAB027_2485) cydB 2705693..2706829 (-) 1137 WP_046126879.1 cytochrome d ubiquinol oxidase subunit II -
  VAB027_RS12600 (VAB027_2486) cydA 2706847..2708433 (-) 1587 WP_000568055.1 cytochrome ubiquinol oxidase subunit I -
  VAB027_RS12605 (VAB027_2487) ruvB 2708892..2709896 (-) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VAB027_RS12610 (VAB027_2489) ruvA 2709952..2710566 (-) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  VAB027_RS12615 (VAB027_2490) ruvC 2710660..2711181 (-) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  VAB027_RS12620 (VAB027_2491) cysS 2711269..2712648 (-) 1380 WP_000913178.1 cysteine--tRNA ligase -
  VAB027_RS12625 (VAB027_2492) - 2712794..2713288 (+) 495 WP_000631302.1 peptidylprolyl isomerase -
  VAB027_RS12630 (VAB027_2493) lpxH 2713329..2714069 (+) 741 WP_046126880.1 UDP-2,3-diacylglucosamine diphosphatase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37298.75 Da        Isoelectric Point: 5.0460

>NTDB_id=124522 VAB027_RS12605 WP_000568491.1 2708892..2709896(-) (ruvB) [Vibrio cholerae strain 10432-62]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=124522 VAB027_RS12605 WP_000568491.1 2708892..2709896(-) (ruvB) [Vibrio cholerae strain 10432-62]
ATGATAGAAGCCGATCGTTTAATCGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCAGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCGCAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTTCGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCCATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAAGGTTATTTACAACGTACACCACGAGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.682

96.108

0.593
  ruvB Streptococcus pneumoniae TIGR4

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae R6

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae D39

59.937

94.91

0.569
  ruvB Synechocystis sp. PCC 6803

55.663

92.515

0.515
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494