Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VAB027_RS12610 Genome accession   NZ_CP010812
Coordinates   2709952..2710566 (-) Length   204 a.a.
NCBI ID   WP_000580350.1    Uniprot ID   A0ABX9FGD2
Organism   Vibrio cholerae strain 10432-62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2704952..2715566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS12585 (VAB027_2483) ybgE 2705263..2705580 (-) 318 WP_046126878.1 cyd operon protein YbgE -
  VAB027_RS12590 (VAB027_2484) cydX 2705573..2705680 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  VAB027_RS12595 (VAB027_2485) cydB 2705693..2706829 (-) 1137 WP_046126879.1 cytochrome d ubiquinol oxidase subunit II -
  VAB027_RS12600 (VAB027_2486) cydA 2706847..2708433 (-) 1587 WP_000568055.1 cytochrome ubiquinol oxidase subunit I -
  VAB027_RS12605 (VAB027_2487) ruvB 2708892..2709896 (-) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VAB027_RS12610 (VAB027_2489) ruvA 2709952..2710566 (-) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  VAB027_RS12615 (VAB027_2490) ruvC 2710660..2711181 (-) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  VAB027_RS12620 (VAB027_2491) cysS 2711269..2712648 (-) 1380 WP_000913178.1 cysteine--tRNA ligase -
  VAB027_RS12625 (VAB027_2492) - 2712794..2713288 (+) 495 WP_000631302.1 peptidylprolyl isomerase -
  VAB027_RS12630 (VAB027_2493) lpxH 2713329..2714069 (+) 741 WP_046126880.1 UDP-2,3-diacylglucosamine diphosphatase -
  VAB027_RS12635 (VAB027_2494) - 2714165..2715379 (+) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22049.75 Da        Isoelectric Point: 5.0954

>NTDB_id=124523 VAB027_RS12610 WP_000580350.1 2709952..2710566(-) (ruvA) [Vibrio cholerae strain 10432-62]
MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=124523 VAB027_RS12610 WP_000580350.1 2709952..2710566(-) (ruvA) [Vibrio cholerae strain 10432-62]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCGATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTTGTGC
GGGAAGATGCGCAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCCAAAATGGGGCTCGCAATACTTTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment