Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   C645_RS06035 Genome accession   NZ_CP008740
Coordinates   1183222..1183569 (+) Length   115 a.a.
NCBI ID   WP_038440076.1    Uniprot ID   -
Organism   Haemophilus influenzae 2019     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178222..1188569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS06020 (C645_06095) - 1179968..1181527 (+) 1560 WP_032824908.1 phosphoethanolamine transferase -
  C645_RS06025 (C645_06100) lspA 1181597..1182112 (+) 516 WP_005688350.1 signal peptidase II -
  C645_RS06030 (C645_06105) ispH 1182109..1183053 (+) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C645_RS06035 (C645_06110) comE1/comEA 1183222..1183569 (+) 348 WP_038440076.1 helix-hairpin-helix domain-containing protein Machinery gene
  C645_RS06040 (C645_06115) thiB 1183816..1184814 (+) 999 WP_005647868.1 thiamine ABC transporter substrate binding subunit -
  C645_RS06045 (C645_06120) thiP 1184819..1186435 (+) 1617 WP_005647866.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  C645_RS06050 (C645_06125) thiQ 1186419..1187066 (+) 648 WP_005669738.1 thiamine ABC transporter ATP-binding protein -
  C645_RS06055 (C645_06130) bioB 1187179..1188180 (+) 1002 WP_005655985.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12307.12 Da        Isoelectric Point: 8.0085

>NTDB_id=123974 C645_RS06035 WP_038440076.1 1183222..1183569(+) (comE1/comEA) [Haemophilus influenzae 2019]
MKLMKTLFTSVVLCGALVASSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=123974 C645_RS06035 WP_038440076.1 1183222..1183569(+) (comE1/comEA) [Haemophilus influenzae 2019]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCACTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

95.536

97.391

0.93
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio cholerae C6706

42.727

95.652

0.409
  comEA Vibrio cholerae strain A1552

42.727

95.652

0.409
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391

Multiple sequence alignment