Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FE36_RS17125 Genome accession   NZ_CP007810
Coordinates   3902252..3903772 (+) Length   506 a.a.
NCBI ID   WP_047340240.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain YM15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3897252..3908772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE36_RS21920 - 3898331..3898567 (+) 237 Protein_3437 hypothetical protein -
  FE36_RS17110 (FE36_18005) - 3898830..3900815 (-) 1986 WP_024712424.1 beta-N-acetylglucosaminidase domain-containing protein -
  FE36_RS17115 (FE36_18010) - 3901429..3901803 (-) 375 WP_014504990.1 P-II family nitrogen regulator -
  FE36_RS17120 (FE36_18015) - 3901957..3902235 (+) 279 WP_014504991.1 accessory factor UbiK family protein -
  FE36_RS17125 (FE36_18020) comM 3902252..3903772 (+) 1521 WP_047340240.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FE36_RS17130 (FE36_18025) - 3904247..3904756 (+) 510 WP_047340241.1 lipocalin family protein -
  FE36_RS22810 - 3904910..3905086 (-) 177 WP_010374782.1 hypothetical protein -
  FE36_RS17135 (FE36_18035) - 3905469..3907019 (+) 1551 WP_047340242.1 EAL domain-containing protein -
  FE36_RS17140 (FE36_18040) - 3907085..3908206 (-) 1122 WP_014504996.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54039.88 Da        Isoelectric Point: 8.6054

>NTDB_id=123560 FE36_RS17125 WP_047340240.1 3902252..3903772(+) (comM) [Xanthomonas oryzae pv. oryzicola strain YM15]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGSQKAPAAELAVKALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLNLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVTARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=123560 FE36_RS17125 WP_047340240.1 3902252..3903772(+) (comM) [Xanthomonas oryzae pv. oryzicola strain YM15]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCAGCCGAATTGGCGGTGAAGGCGCTCGGCGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGAATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTGGGCGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGTA
TTTCCGGCCCCTTGCTGGACCGCATAGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGTAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCACCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAACGCGCCATCG
AACACCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.917

100

0.569
  comM Haemophilus influenzae Rd KW20

55.382

100

0.559
  comM Vibrio campbellii strain DS40M4

54.545

100

0.545
  comM Glaesserella parasuis strain SC1401

54.545

100

0.545
  comM Legionella pneumophila str. Paris

51.911

98.221

0.51
  comM Legionella pneumophila strain ERS1305867

51.911

98.221

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.957

100

0.46

Multiple sequence alignment