Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   H733_RS07280 Genome accession   NZ_CP007805
Coordinates   1504268..1504615 (-) Length   115 a.a.
NCBI ID   WP_038440076.1    Uniprot ID   -
Organism   Haemophilus influenzae CGSHiCZ412602     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499268..1509615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H733_RS07255 (H733_1427) otnI 1499735..1500511 (-) 777 WP_005647880.1 2-oxo-tetronate isomerase -
  H733_RS07260 (H733_1428) otnC 1500514..1501146 (-) 633 WP_005665968.1 3-oxo-tetronate 4-phosphate decarboxylase -
  H733_RS07265 (H733_1429) otnK 1501143..1502384 (-) 1242 WP_038440074.1 3-oxo-tetronate kinase -
  H733_RS07270 (H733_1430) ltnD 1502387..1503292 (-) 906 WP_038440075.1 L-threonate dehydrogenase -
  H733_RS07275 (H733_1431) - 1503463..1504221 (+) 759 WP_005647892.1 DeoR/GlpR family DNA-binding transcription regulator -
  H733_RS07280 (H733_1432) comE1/comEA 1504268..1504615 (-) 348 WP_038440076.1 helix-hairpin-helix domain-containing protein Machinery gene
  H733_RS07285 (H733_1433) ispH 1504783..1505727 (-) 945 WP_038440077.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H733_RS07290 (H733_1434) lspA 1505724..1506239 (-) 516 WP_011272344.1 signal peptidase II -
  H733_RS07295 (H733_1435) - 1506309..1507868 (-) 1560 WP_038440078.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12307.12 Da        Isoelectric Point: 8.0085

>NTDB_id=123498 H733_RS07280 WP_038440076.1 1504268..1504615(-) (comE1/comEA) [Haemophilus influenzae CGSHiCZ412602]
MKLMKTLFTSVVLCGALVASSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=123498 H733_RS07280 WP_038440076.1 1504268..1504615(-) (comE1/comEA) [Haemophilus influenzae CGSHiCZ412602]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCACTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

95.536

97.391

0.93
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio cholerae C6706

42.727

95.652

0.409
  comEA Vibrio cholerae strain A1552

42.727

95.652

0.409
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391

Multiple sequence alignment