Detailed information NTG0122844

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACEE_RS05210
• Genome accession: NZ_CP007715
• Coordinates: 1146046..1147239 (-)
• Length: 397 a.a.
• NCBI ID: WP_039197143.1
• Uniprot ID: -
• Organism: Actinobacillus equuli subsp. equuli strain 19392
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1141046..1152239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEE_RS05185 (ACEE_05310)	lptE	1142838..1143332 (+)	495	WP_005597385.1	LPS assembly lipoprotein LptE	-
ACEE_RS05190 (ACEE_05315)	holA	1143440..1144465 (+)	1026	WP_039197140.1	DNA polymerase III subunit delta	-
ACEE_RS05195 (ACEE_05320)	yacG	1144542..1144730 (-)	189	WP_005623139.1	DNA gyrase inhibitor YacG	-
ACEE_RS05200 (ACEE_05325)	coaE	1144712..1145350 (-)	639	WP_039197141.1	dephospho-CoA kinase	-
ACEE_RS05205 (ACEE_05330)	-	1145372..1146046 (-)	675	WP_039197142.1	fimbrial protein	-
ACEE_RS05210 (ACEE_05335)	pilC	1146046..1147239 (-)	1194	WP_039197143.1	type II secretion system F family protein	Machinery gene
ACEE_RS05215 (ACEE_05340)	pilB	1147232..1148614 (-)	1383	WP_039197144.1	GspE/PulE family protein	Machinery gene
ACEE_RS05220 (ACEE_05345)	pilA	1148635..1149072 (-)	438	WP_039197145.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
ACEE_RS05225 (ACEE_05350)	radA	1149253..1150632 (+)	1380	WP_039197146.1	DNA repair protein RadA	Machinery gene
ACEE_RS05230 (ACEE_05355)	pepB	1150698..1151981 (+)	1284	WP_039199020.1	aminopeptidase PepB	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 44883.42 Da
• Isoelectric Point: 9.7263

>NTDB_id=122844 ACEE_RS05210 WP_039197143.1 1146046..1147239(-) (pilC) [Actinobacillus equuli subsp. equuli strain 19392]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQSLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLFCFAKKFGN
LTACQMRLLSYIPFFNQVIRYIRIIFFTQNLALMLSAHLHLEAALNAFLSEKMHDRLLQQQIRLTLSLLKQGYKFSEGLN
PTVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPVLMLLMGIIIGTVLIGLYLPIFDLGGLV

Nucleotide

• Length: 1194 bp

>NTDB_id=122844 ACEE_RS05210 WP_039197143.1 1146046..1147239(-) (pilC) [Actinobacillus equuli subsp. equuli strain 19392]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAGTTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGTTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATATACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGCTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAGCAACAAATACGGCTTACATTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGACTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGTGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGGTTTTAATGCTAC
TTATGGGTATCATTATTGGTACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGGTCTCGTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	48.615	100	0.486
pilC	Haemophilus influenzae Rd KW20	39	100	0.393
pilC	Haemophilus influenzae 86-028NP	38.75	100	0.39