Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | EG66_RS00210 | Genome accession | NZ_CP007605 |
| Coordinates | 39165..40301 (+) | Length | 378 a.a. |
| NCBI ID | WP_038419560.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BM012B | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34165..45301
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG66_RS00175 (EG66_00200) | panD | 34616..34969 (+) | 354 | WP_023591491.1 | aspartate 1-decarboxylase | - |
| EG66_RS00180 (EG66_00205) | - | 34972..35265 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| EG66_RS00185 (EG66_00210) | - | 35265..36260 (+) | 996 | WP_038419552.1 | PDZ domain-containing protein | - |
| EG66_RS00190 (EG66_00215) | comB6 | 36268..37323 (+) | 1056 | WP_038419554.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| EG66_RS00195 | comB7 | 37339..37452 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| EG66_RS00200 (EG66_00225) | comB8 | 37449..38186 (+) | 738 | WP_038419556.1 | type IV secretion system protein | Machinery gene |
| EG66_RS00205 (EG66_00230) | comB9 | 38186..39172 (+) | 987 | WP_038419558.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| EG66_RS00210 (EG66_00235) | comB10 | 39165..40301 (+) | 1137 | WP_038419560.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| EG66_RS00215 (EG66_00240) | - | 40372..41784 (+) | 1413 | WP_038419562.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| EG66_RS00220 (EG66_00245) | gmd | 41813..42958 (+) | 1146 | WP_038419564.1 | GDP-mannose 4,6-dehydratase | - |
| EG66_RS00225 (EG66_00250) | - | 42951..43883 (+) | 933 | WP_023591499.1 | GDP-L-fucose synthase family protein | - |
| EG66_RS08200 (EG66_00260) | - | 44273..44701 (-) | 429 | WP_080261117.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42269.90 Da Isoelectric Point: 9.9924
>NTDB_id=121588 EG66_RS00210 WP_038419560.1 39165..40301(+) (comB10) [Helicobacter pylori strain BM012B]
MNKWLKGAIVFVGGFATIVTISLIYHQKPKAPLNNQPKLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPSIDLKTNTTPPKKDFSLKQWDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFVGGFATIVTISLIYHQKPKAPLNNQPKLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPSIDLKTNTTPPKKDFSLKQWDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=121588 EG66_RS00210 WP_038419560.1 39165..40301(+) (comB10) [Helicobacter pylori strain BM012B]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCAAAACTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTTCAATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAGGTCATAGGCTATTACAGCAACAACAATAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATATTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCAAAACTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTTCAATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAGGTCATAGGCTATTACAGCAACAACAATAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATATTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.296 |
100 |
0.963 |