Detailed information NTG0121587

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: EG66_RS00205
• Genome accession: NZ_CP007605
• Coordinates: 38186..39172 (+)
• Length: 328 a.a.
• NCBI ID: WP_038419558.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BM012B
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33186..44172

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG66_RS00175 (EG66_00200)	panD	34616..34969 (+)	354	WP_023591491.1	aspartate 1-decarboxylase	-
EG66_RS00180 (EG66_00205)	-	34972..35265 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
EG66_RS00185 (EG66_00210)	-	35265..36260 (+)	996	WP_038419552.1	PDZ domain-containing protein	-
EG66_RS00190 (EG66_00215)	comB6	36268..37323 (+)	1056	WP_038419554.1	P-type conjugative transfer protein TrbL	Machinery gene
EG66_RS00195	comB7	37339..37452 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
EG66_RS00200 (EG66_00225)	comB8	37449..38186 (+)	738	WP_038419556.1	type IV secretion system protein	Machinery gene
EG66_RS00205 (EG66_00230)	comB9	38186..39172 (+)	987	WP_038419558.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EG66_RS00210 (EG66_00235)	comB10	39165..40301 (+)	1137	WP_038419560.1	DNA type IV secretion system protein ComB10	Machinery gene
EG66_RS00215 (EG66_00240)	-	40372..41784 (+)	1413	WP_038419562.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EG66_RS00220 (EG66_00245)	gmd	41813..42958 (+)	1146	WP_038419564.1	GDP-mannose 4,6-dehydratase	-
EG66_RS00225 (EG66_00250)	-	42951..43883 (+)	933	WP_023591499.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37633.35 Da
• Isoelectric Point: 9.5533

>NTDB_id=121587 EG66_RS00205 WP_038419558.1 38186..39172(+) (comB9) [Helicobacter pylori strain BM012B]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMRPQNKENALENTPTNDNKPLKEEPLKAGKEEAKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCL
GICSKKSKPSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKKGKDE

Nucleotide

• Length: 987 bp

>NTDB_id=121587 EG66_RS00205 WP_038419558.1 38186..39172(+) (comB9) [Helicobacter pylori strain BM012B]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCAAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAGGCCGCAAAATAAAGAAAATGCCCTTGAAAATACCCCCACAAACGACAACAAGCCCTT
AAAAGAAGAACCCTTAAAAGCAGGAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACCA
ATGCAATGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
GGGATTTGTTCTAAAAAATCCAAACCCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATT
TGACAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGT
TTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterProScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.771	100	0.939