Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | EG66_RS00190 | Genome accession | NZ_CP007605 |
| Coordinates | 36268..37323 (+) | Length | 351 a.a. |
| NCBI ID | WP_038419554.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BM012B | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 31268..42323
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG66_RS00160 (EG66_00185) | - | 31711..32124 (+) | 414 | WP_001023008.1 | universal stress protein | - |
| EG66_RS00165 (EG66_00190) | - | 32126..32401 (+) | 276 | WP_000784906.1 | ATP-dependent Clp protease adaptor ClpS | - |
| EG66_RS00170 (EG66_00195) | - | 32401..34626 (+) | 2226 | WP_023591490.1 | AAA family ATPase | - |
| EG66_RS00175 (EG66_00200) | panD | 34616..34969 (+) | 354 | WP_023591491.1 | aspartate 1-decarboxylase | - |
| EG66_RS00180 (EG66_00205) | - | 34972..35265 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| EG66_RS00185 (EG66_00210) | - | 35265..36260 (+) | 996 | WP_038419552.1 | PDZ domain-containing protein | - |
| EG66_RS00190 (EG66_00215) | comB6 | 36268..37323 (+) | 1056 | WP_038419554.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| EG66_RS00195 | comB7 | 37339..37452 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| EG66_RS00200 (EG66_00225) | comB8 | 37449..38186 (+) | 738 | WP_038419556.1 | type IV secretion system protein | Machinery gene |
| EG66_RS00205 (EG66_00230) | comB9 | 38186..39172 (+) | 987 | WP_038419558.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| EG66_RS00210 (EG66_00235) | comB10 | 39165..40301 (+) | 1137 | WP_038419560.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| EG66_RS00215 (EG66_00240) | - | 40372..41784 (+) | 1413 | WP_038419562.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39958.03 Da Isoelectric Point: 8.8155
>NTDB_id=121584 EG66_RS00190 WP_038419554.1 36268..37323(+) (comB6) [Helicobacter pylori strain BM012B]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSTLTEALLFVGFFALFNY
ALKNPLRFYEFFQNAIFIAPNMIVQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKIWRSVVITCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSTLTEALLFVGFFALFNY
ALKNPLRFYEFFQNAIFIAPNMIVQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKIWRSVVITCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=121584 EG66_RS00190 WP_038419554.1 36268..37323(+) (comB6) [Helicobacter pylori strain BM012B]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTTTTCAGTGTTAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTGAAAAATCCTTTGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGTGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCTCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAATCTGGAGGAGCGTTGTAATTACATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACCTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTTTTCAGTGTTAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTGAAAAATCCTTTGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGTGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCTCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAATCTGGAGGAGCGTTGTAATTACATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACCTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.296 |
100 |
0.963 |