Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B224_RS06050 Genome accession   NZ_CP007567
Coordinates   1315604..1316071 (-) Length   155 a.a.
NCBI ID   WP_005324058.1    Uniprot ID   -
Organism   Aeromonas media WS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1314219..1355310 1315604..1316071 within 0


Gene organization within MGE regions


Location: 1314219..1355310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B224_RS06045 (B224_1696) - 1314252..1315445 (+) 1194 WP_049832160.1 tyrosine-type recombinase/integrase -
  B224_RS06050 (B224_1697) ssb 1315604..1316071 (-) 468 WP_005324058.1 single-stranded DNA-binding protein Machinery gene
  B224_RS06055 (B224_1698) - 1316068..1316682 (-) 615 WP_005324055.1 3'-5' exonuclease -
  B224_RS06060 (B224_1700) - 1316704..1317003 (-) 300 WP_041205538.1 hypothetical protein -
  B224_RS06065 (B224_1701) - 1317017..1317433 (-) 417 WP_041205544.1 hypothetical protein -
  B224_RS06070 (B224_1703) - 1317520..1317711 (-) 192 WP_005324029.1 hypothetical protein -
  B224_RS06075 (B224_1704) - 1317708..1318166 (-) 459 WP_041205547.1 hypothetical protein -
  B224_RS23380 (B224_1705) - 1318156..1318323 (-) 168 WP_005324025.1 hypothetical protein -
  B224_RS23620 (B224_1707) - 1318320..1320170 (-) 1851 WP_005324023.1 phage N-6-adenine-methyltransferase -
  B224_RS06085 (B224_1708) - 1320167..1320511 (-) 345 WP_005324021.1 DUF4406 domain-containing protein -
  B224_RS22105 - 1320646..1321230 (-) 585 WP_081805672.1 hypothetical protein -
  B224_RS06090 (B224_1709) - 1321435..1322085 (-) 651 WP_041205550.1 LexA family protein -
  B224_RS21785 - 1322173..1322349 (+) 177 WP_049832161.1 Cro/CI family transcriptional regulator -
  B224_RS06095 (B224_1710) - 1322346..1322867 (+) 522 WP_049832162.1 phage regulatory CII family protein -
  B224_RS06100 (B224_1711) - 1322945..1323157 (+) 213 WP_005324016.1 hypothetical protein -
  B224_RS21790 (B224_1712) - 1323150..1324070 (+) 921 WP_049832163.1 replication protein -
  B224_RS06110 (B224_1713) - 1324070..1324738 (+) 669 WP_005324011.1 replication protein P -
  B224_RS06115 (B224_1714) - 1324725..1325093 (+) 369 WP_193354202.1 hypothetical protein -
  B224_RS06120 (B224_1715) - 1325099..1325374 (+) 276 WP_148304688.1 hypothetical protein -
  B224_RS06125 (B224_1716) - 1325487..1326161 (+) 675 WP_233421516.1 phage antirepressor KilAC domain-containing protein -
  B224_RS06130 (B224_1717) - 1326158..1326355 (+) 198 WP_005324004.1 DUF3283 family protein -
  B224_RS06135 (B224_1718) - 1326352..1327344 (+) 993 WP_148304689.1 DUF968 domain-containing protein -
  B224_RS06140 (B224_1719) - 1327331..1327717 (+) 387 WP_041205558.1 RusA family crossover junction endodeoxyribonuclease -
  B224_RS06145 (B224_1720) - 1327812..1328333 (+) 522 WP_233421499.1 antitermination protein -
  B224_RS06150 - 1328527..1328733 (+) 207 WP_033132437.1 hypothetical protein -
  B224_RS06155 - 1328736..1329227 (+) 492 WP_041205562.1 lysozyme -
  B224_RS22110 - 1329227..1329766 (+) 540 WP_042047481.1 DUF2514 family protein -
  B224_RS06165 (B224_1724) - 1329893..1330429 (+) 537 WP_041205565.1 terminase small subunit -
  B224_RS06170 (B224_1725) - 1330401..1332347 (+) 1947 WP_041205566.1 phage terminase large subunit family protein -
  B224_RS06175 (B224_1726) - 1332344..1332553 (+) 210 WP_005323973.1 hypothetical protein -
  B224_RS06180 (B224_1727) - 1332550..1334112 (+) 1563 WP_041205568.1 phage portal protein -
  B224_RS06185 (B224_1728) - 1334024..1336129 (+) 2106 WP_233421500.1 ClpP-like prohead protease/major capsid protein fusion protein -
  B224_RS06190 (B224_1729) - 1336187..1336501 (+) 315 WP_041205570.1 DUF2190 family protein -
  B224_RS06195 (B224_1731) - 1336501..1336797 (+) 297 WP_005323966.1 hypothetical protein -
  B224_RS06200 (B224_1733) - 1336805..1337413 (+) 609 WP_005323964.1 phage tail protein -
  B224_RS23300 (B224_1734) - 1337448..1337615 (+) 168 WP_005323962.1 hypothetical protein -
  B224_RS06205 (B224_1735) gpU 1337648..1338049 (+) 402 WP_041205572.1 phage tail terminator protein -
  B224_RS06210 (B224_1737) - 1338049..1338525 (+) 477 WP_005323958.1 phage tail tube protein -
  B224_RS21795 (B224_1738) - 1338522..1338959 (+) 438 WP_005323956.1 hypothetical protein -
  B224_RS06215 (B224_1739) - 1339025..1339294 (+) 270 WP_233421517.1 hypothetical protein -
  B224_RS06220 (B224_1740) - 1339275..1341401 (+) 2127 WP_049832164.1 hypothetical protein -
  B224_RS06225 (B224_1741) - 1341398..1342000 (+) 603 WP_049832165.1 hypothetical protein -
  B224_RS06230 (B224_1742) - 1341997..1342581 (+) 585 WP_005324799.1 hypothetical protein -
  B224_RS06235 (B224_1743) - 1342584..1342985 (+) 402 WP_005324797.1 DUF6950 family protein -
  B224_RS21800 (B224_1747) - 1342985..1348807 (+) 5823 WP_049832166.1 phage tail tip protein -
  B224_RS06245 (B224_1748) - 1348864..1350525 (+) 1662 WP_005325293.1 hypothetical protein -
  B224_RS06250 (B224_1749) - 1350522..1350836 (+) 315 WP_005325297.1 hypothetical protein -
  B224_RS06255 (B224_1750) tnpA 1350973..1351398 (-) 426 WP_041205574.1 IS200/IS605-like element ISAeme8 family transposase -
  B224_RS06260 (B224_1751) - 1351457..1352596 (+) 1140 WP_041206863.1 RNA-guided endonuclease InsQ/TnpB family protein -
  B224_RS06265 (B224_1752) - 1353039..1353752 (-) 714 WP_041205576.1 metallophosphoesterase -
  B224_RS06270 (B224_1753) - 1353973..1355310 (+) 1338 WP_041205242.1 IS4-like element ISAeme15 family transposase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17070.05 Da        Isoelectric Point: 7.0146

>NTDB_id=121007 B224_RS06050 WP_005324058.1 1315604..1316071(-) (ssb) [Aeromonas media WS]
MKGINKVILIGNLGQDPEIRYTSGGMAIATLSLATSESWRDKQTGEQKERTEWHRVVLVGKLAEVAGQYLKKGSQVYVEG
KLQTRKWQDQSGQDRYTTEVQVDSFTGVLQMLGGKPQQGSSQKAQSQPPARPAATPSAGQQSNEPPFDYDDDLPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=121007 B224_RS06050 WP_005324058.1 1315604..1316071(-) (ssb) [Aeromonas media WS]
ATGAAAGGCATCAACAAAGTCATCCTGATCGGCAACCTGGGTCAGGATCCTGAAATCAGATACACCTCGGGTGGCATGGC
GATCGCCACCCTCTCTCTGGCCACCAGCGAAAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAGGAACGTACCGAGTGGC
ACCGGGTGGTGCTTGTGGGCAAGCTGGCCGAAGTGGCGGGCCAGTACCTGAAGAAGGGTTCACAGGTCTATGTGGAAGGG
AAACTGCAGACCCGCAAGTGGCAGGACCAAAGCGGTCAGGACCGCTACACCACCGAGGTGCAGGTCGACAGCTTCACCGG
GGTACTGCAGATGCTTGGCGGCAAGCCGCAGCAAGGCAGTTCGCAGAAGGCTCAGTCCCAGCCACCAGCCAGGCCTGCCG
CCACCCCATCTGCGGGCCAGCAAAGCAACGAGCCGCCATTTGATTACGATGACGACCTGCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60.345

100

0.677
  ssb Glaesserella parasuis strain SC1401

50.802

100

0.613
  ssb Neisseria meningitidis MC58

40.678

100

0.465
  ssb Neisseria gonorrhoeae MS11

40.678

100

0.465
  ssb Latilactobacillus sakei subsp. sakei 23K

33.526

100

0.374

Multiple sequence alignment