Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DI57_RS19170 Genome accession   NZ_CP007546
Coordinates   4062252..4063772 (-) Length   506 a.a.
NCBI ID   WP_029739572.1    Uniprot ID   -
Organism   Enterobacter asburiae L1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4057252..4068772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI57_RS19160 (DI57_19200) hdfR 4060943..4061764 (-) 822 WP_029739573.1 HTH-type transcriptional regulator HdfR -
  DI57_RS19165 (DI57_19205) - 4061883..4062221 (+) 339 WP_023309658.1 DUF413 domain-containing protein -
  DI57_RS19170 (DI57_19210) comM 4062252..4063772 (-) 1521 WP_029739572.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DI57_RS22315 ilvL 4064114..4064212 (+) 99 WP_001311244.1 ilv operon leader peptide -
  DI57_RS22765 ilvX 4064299..4064349 (+) 51 WP_166792073.1 peptide IlvX -
  DI57_RS19175 (DI57_19215) ilvG 4064352..4065998 (+) 1647 WP_029739571.1 acetolactate synthase 2 catalytic subunit -
  DI57_RS19180 (DI57_19220) ilvM 4065995..4066258 (+) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  DI57_RS19185 (DI57_19225) ilvE 4066277..4067206 (+) 930 WP_023326297.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54925.89 Da        Isoelectric Point: 6.8203

>NTDB_id=120768 DI57_RS19170 WP_029739572.1 4062252..4063772(-) (comM) [Enterobacter asburiae L1]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQMRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=120768 DI57_RS19170 WP_029739572.1 4062252..4063772(-) (comM) [Enterobacter asburiae L1]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTAAGTAA
TGGGCTACCGGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCGGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGTCATGAACTGTCCGAGCCGGAGGAGTGCGATGATGCTATAGCGGATGCTCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCGGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACAATGCTGGCAAGCAGGTTAAGTGGGTTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGCCGTCCTTTTCG
TTCGCCACATCATAGCGCTTCACTGACGGCAATGGTTGGCGGTGGGTCTATCCCCGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTATTTCTCGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGAGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCGCACGAGCGAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAACCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGTCTACTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGATGTACGCGAGCGGGTGATTGCAGCCCAGATGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCCGACAGTTCTGTTCTCTTAACGTTGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTACTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.546

100

0.589
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443

Multiple sequence alignment