Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DA70_RS02860 Genome accession   NZ_CP007506
Coordinates   614647..615147 (+) Length   166 a.a.
NCBI ID   WP_023597713.1    Uniprot ID   A0A378YTG7
Organism   Pandoraea pnomenusa strain RB38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 609647..620147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA70_RS02850 (DA70_13370) uvrA 610076..612940 (-) 2865 WP_025249884.1 excinuclease ABC subunit UvrA -
  DA70_RS02855 (DA70_13365) - 613453..614616 (+) 1164 WP_025249883.1 MFS transporter -
  DA70_RS02860 (DA70_13360) ssb 614647..615147 (+) 501 WP_023597713.1 single-stranded DNA-binding protein Machinery gene
  DA70_RS02865 (DA70_13355) - 615458..615787 (-) 330 WP_023597712.1 DUF4148 domain-containing protein -
  DA70_RS02870 (DA70_13350) - 616086..619298 (+) 3213 WP_023597711.1 efflux RND transporter permease subunit -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17544.28 Da        Isoelectric Point: 5.3177

>NTDB_id=120091 DA70_RS02860 WP_023597713.1 614647..615147(+) (ssb) [Pandoraea pnomenusa strain RB38]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTDRYSTEIVADQMQMLGGRSGGGEGGGGGGYSRGGGDEGGGGYSRGGGGGGGGRQQAPAKPSGGFDDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=120091 DA70_RS02860 WP_023597713.1 614647..615147(+) (ssb) [Pandoraea pnomenusa strain RB38]
ATGGCATCAGTCAACAAAGTGATCCTGGTCGGCAACCTTGGCGCCGACCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTCGCGAACATCCGCCTGGCCACGACCGACCGTTACAAGGACAAGCAGTCCGGCGAGTTCAAGGAAATGACGGAATGGC
ACCGCGTGTCGTTCTTCGGCCGGCTCGCGGAAATCGTCAATGAGTACCTGAAGAAGGGCTCGTCGGTGTATATCGAAGGC
CGTATCCGTACGCGCAAGTACCAGGCGCAGGACGGCACGGACCGTTACAGCACGGAAATCGTGGCGGACCAGATGCAGAT
GCTGGGTGGCCGCAGCGGCGGCGGTGAAGGTGGCGGCGGTGGCGGCTACTCGCGCGGTGGTGGCGACGAGGGCGGCGGCG
GCTATTCGCGTGGCGGTGGTGGTGGCGGCGGTGGCCGTCAGCAGGCGCCGGCCAAGCCGTCCGGCGGTTTCGACGACATG
GACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378YTG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.735

100

0.566
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.536
  ssb Neisseria meningitidis MC58

45.506

100

0.488
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.488
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.398

Multiple sequence alignment