Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DA70_RS02270 Genome accession   NZ_CP007506
Coordinates   494030..495598 (-) Length   522 a.a.
NCBI ID   WP_025249922.1    Uniprot ID   -
Organism   Pandoraea pnomenusa strain RB38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 489030..500598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA70_RS02250 (DA70_13990) - 490470..491822 (+) 1353 WP_023872945.1 sigma-54-dependent transcriptional regulator -
  DA70_RS02255 (DA70_13985) - 491896..492420 (-) 525 WP_023597837.1 TlpA family protein disulfide reductase -
  DA70_RS02260 (DA70_13980) - 492484..493200 (-) 717 WP_025249923.1 hypothetical protein -
  DA70_RS02265 (DA70_13975) - 493458..493997 (+) 540 WP_023597835.1 hypothetical protein -
  DA70_RS02270 (DA70_13970) comM 494030..495598 (-) 1569 WP_025249922.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DA70_RS02275 (DA70_13965) - 495911..496159 (-) 249 WP_024788671.1 accessory factor UbiK family protein -
  DA70_RS02280 (DA70_13960) - 496568..497395 (+) 828 WP_025249921.1 TorF family putative porin -
  DA70_RS02285 (DA70_13955) - 497409..497747 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  DA70_RS02290 (DA70_13950) amt 497773..499308 (+) 1536 WP_023597831.1 ammonium transporter -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 55217.98 Da        Isoelectric Point: 7.9027

>NTDB_id=120088 DA70_RS02270 WP_025249922.1 494030..495598(-) (comM) [Pandoraea pnomenusa strain RB38]
MTLAIVSSRAITGMAARPVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRRVRGGLAMAGAIAAEASTRALVLPVDSAQEAALVEDATVFGAR
TLLDVCAHLAEPDVATPLPRATVPGGSMRQDGAALSPCTGERPIPTDAVADAPDLSDIKGQAPAKRALEVAAAGGHHILF
YGPPGTGKSMLATRLAGLLPALSKAHAVESATLASLSAQGFDLRHWGRRPVRTPHHTASAAALVGGGSTPRPGEISLAHR
GVLFLDELPEFQRRVLEVLREPLEQGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRRCRCTADAVARYRNRLSG
PLLDRIDLHVEVPALSAETFAAQADGERSEVVASRVRQAREWQLSRQGQLNCALSGRALEMQCALSRDAEAVLHRAVAQH
HWSARTYHRVLRVARTVADLAQCQAIDAHHVAEAVQYREAPS

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=120088 DA70_RS02270 WP_025249922.1 494030..495598(-) (comM) [Pandoraea pnomenusa strain RB38]
ATGACATTGGCCATCGTGAGCAGCCGGGCGATTACGGGCATGGCAGCGCGCCCGGTGACGGTCGAAGTCCATCTTGCGAA
CGGGCTCCCCGGCCTGTCGCTGGTGGGTCTGCCCGACACCGAAGTCAAGGAAAGCCGCGAGCGGGTACGCTCGGCATTGC
AGAACAGCCGGTTCGAATTTCCGGCGCGGCGCATCACGGTCAATCTGGCGCCCGCTGACCTGCCGAAGGCATCCGGTTGT
TTCGACCTGCCGATTGCGCTCGGCATTCTCGCGGCCAGTGGCCAGTTGCCCGAGGCGGGACTGCGGACGCACGAGTTCGC
GGGCGAATTGTCGCTCACGGGCGAGCTGCGCCGCGTGCGTGGGGGGCTCGCCATGGCGGGCGCCATCGCCGCCGAGGCGT
CGACGCGCGCGCTGGTGCTTCCCGTGGACAGCGCTCAGGAGGCGGCCCTGGTCGAAGACGCCACCGTCTTCGGCGCACGC
ACGTTGCTCGATGTCTGTGCGCATCTTGCCGAACCCGACGTTGCGACGCCGTTGCCGCGTGCCACCGTGCCGGGTGGGTC
GATGCGGCAGGACGGCGCAGCGTTGTCGCCCTGCACCGGCGAGCGGCCGATCCCCACGGACGCGGTGGCCGATGCGCCCG
ATCTGTCGGACATCAAGGGGCAGGCCCCGGCTAAACGGGCACTGGAAGTGGCGGCCGCGGGCGGACATCACATTCTCTTC
TATGGGCCGCCGGGCACGGGCAAGTCGATGCTGGCGACGCGGCTCGCCGGTCTGCTTCCCGCGTTAAGCAAGGCACATGC
CGTGGAATCCGCCACGCTCGCGAGCCTCAGCGCGCAGGGGTTCGACTTGCGCCACTGGGGACGCCGCCCCGTTCGCACCC
CGCATCACACGGCATCGGCTGCCGCACTCGTGGGCGGCGGCAGCACGCCGCGCCCTGGCGAAATCAGCCTGGCCCATCGC
GGGGTGCTCTTTCTCGACGAATTGCCCGAATTCCAGCGGCGTGTGCTCGAAGTTCTGCGCGAACCACTCGAGCAGGGGCA
TGTGACCATCTCCCGTGCCGGCGGACATGCCACGTTCCCCGCCGCGTTCCAGTTGGTCGCCGCAATGAACCCGTGTCCCT
GCGGCGATCTGGGGCACCCGTCGCGACGCTGTCGCTGCACGGCCGACGCGGTGGCGCGCTACCGCAACCGGCTCTCAGGG
CCGCTGCTCGATCGCATCGACCTGCACGTGGAAGTGCCGGCGCTGAGCGCCGAGACGTTCGCCGCCCAGGCCGACGGCGA
GCGGAGTGAGGTTGTCGCATCGCGCGTCAGGCAGGCGCGGGAGTGGCAGTTGTCGCGTCAGGGGCAATTGAACTGCGCGC
TGTCCGGACGGGCCCTGGAGATGCAATGCGCATTGTCGCGCGACGCCGAAGCGGTCCTGCATCGGGCCGTGGCGCAGCAC
CACTGGTCGGCTCGCACCTATCATCGCGTGCTGCGTGTGGCGCGCACCGTCGCGGATCTTGCGCAATGCCAAGCCATCGA
TGCCCATCACGTCGCCGAAGCTGTGCAATATCGAGAGGCCCCCAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(426-518)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.445

99.425

0.511
  comM Vibrio campbellii strain DS40M4

49.904

99.425

0.496
  comM Haemophilus influenzae Rd KW20

49.326

99.425

0.49
  comM Glaesserella parasuis strain SC1401

49.038

99.617

0.489
  comM Legionella pneumophila str. Paris

47.025

99.808

0.469
  comM Legionella pneumophila strain ERS1305867

47.025

99.808

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.994

99.808

0.429

Multiple sequence alignment