Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | NTHIC486_RS02760 | Genome accession | NZ_CP007471 |
| Coordinates | 546541..546954 (+) | Length | 137 a.a. |
| NCBI ID | WP_044345311.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain C486 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 541541..551954
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NTHIC486_RS02740 (NTHIC486_00548) | - | 542029..544623 (-) | 2595 | WP_005686901.1 | penicillin-binding protein 1A | - |
| NTHIC486_RS02745 (NTHIC486_00549) | comA | 544722..545519 (+) | 798 | WP_005686900.1 | pilus assembly protein PilM | Machinery gene |
| NTHIC486_RS02750 (NTHIC486_00550) | comB | 545520..546026 (+) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| NTHIC486_RS02755 (NTHIC486_00551) | comC | 546023..546544 (+) | 522 | WP_044345309.1 | competence protein ComC | Machinery gene |
| NTHIC486_RS02760 (NTHIC486_00552) | comD | 546541..546954 (+) | 414 | WP_044345311.1 | pilus assembly protein PilP | Machinery gene |
| NTHIC486_RS02765 (NTHIC486_00553) | comE | 546964..548301 (+) | 1338 | WP_005686897.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| NTHIC486_RS02770 (NTHIC486_00554) | - | 548314..549000 (+) | 687 | WP_005686895.1 | ComF family protein | - |
| NTHIC486_RS02775 (NTHIC486_00555) | nfuA | 549076..549672 (+) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| NTHIC486_RS02780 (NTHIC486_00556) | nudC | 549739..550533 (+) | 795 | WP_014550416.1 | NAD(+) diphosphatase | - |
| NTHIC486_RS02785 (NTHIC486_00557) | - | 550569..551159 (+) | 591 | WP_005656455.1 | YjaG family protein | - |
| NTHIC486_RS02790 (NTHIC486_00558) | - | 551299..551571 (+) | 273 | WP_014550417.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15746.93 Da Isoelectric Point: 4.7159
>NTDB_id=119738 NTHIC486_RS02760 WP_044345311.1 546541..546954(+) (comD) [Haemophilus influenzae strain C486]
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYRVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYRVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=119738 NTHIC486_RS02760 WP_044345311.1 546541..546954(+) (comD) [Haemophilus influenzae strain C486]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGAGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGAGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
97.81 |
100 |
0.978 |
| comD | Haemophilus influenzae 86-028NP |
97.08 |
100 |
0.971 |