Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NTHIC486_RS02755 Genome accession   NZ_CP007471
Coordinates   546023..546544 (+) Length   173 a.a.
NCBI ID   WP_044345309.1    Uniprot ID   -
Organism   Haemophilus influenzae strain C486     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 541023..551544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHIC486_RS02735 (NTHIC486_00547) - 541108..541953 (-) 846 WP_005686902.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  NTHIC486_RS02740 (NTHIC486_00548) - 542029..544623 (-) 2595 WP_005686901.1 penicillin-binding protein 1A -
  NTHIC486_RS02745 (NTHIC486_00549) comA 544722..545519 (+) 798 WP_005686900.1 pilus assembly protein PilM Machinery gene
  NTHIC486_RS02750 (NTHIC486_00550) comB 545520..546026 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  NTHIC486_RS02755 (NTHIC486_00551) comC 546023..546544 (+) 522 WP_044345309.1 competence protein ComC Machinery gene
  NTHIC486_RS02760 (NTHIC486_00552) comD 546541..546954 (+) 414 WP_044345311.1 pilus assembly protein PilP Machinery gene
  NTHIC486_RS02765 (NTHIC486_00553) comE 546964..548301 (+) 1338 WP_005686897.1 type IV pilus secretin PilQ family protein Machinery gene
  NTHIC486_RS02770 (NTHIC486_00554) - 548314..549000 (+) 687 WP_005686895.1 ComF family protein -
  NTHIC486_RS02775 (NTHIC486_00555) nfuA 549076..549672 (+) 597 WP_005656459.1 Fe-S biogenesis protein NfuA -
  NTHIC486_RS02780 (NTHIC486_00556) nudC 549739..550533 (+) 795 WP_014550416.1 NAD(+) diphosphatase -
  NTHIC486_RS02785 (NTHIC486_00557) - 550569..551159 (+) 591 WP_005656455.1 YjaG family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20057.18 Da        Isoelectric Point: 9.3359

>NTDB_id=119737 NTHIC486_RS02755 WP_044345309.1 546023..546544(+) (comC) [Haemophilus influenzae strain C486]
MKAFFNDPFTPFGKWLSQPFYVHGLTFLLLLSAVIFRPVLDYIEASTHFDETEYELAKKSSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLATRYGLSQHLRWEMGQKPILHLQLTGHFEKTKTFLTALLANSSQLSVSRLQFIKPEDNPL
QTEIIFQLDKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=119737 NTHIC486_RS02755 WP_044345309.1 546023..546544(+) (comC) [Haemophilus influenzae strain C486]
ATGAAAGCTTTTTTTAACGATCCTTTTACTCCTTTTGGAAAATGGCTAAGCCAGCCTTTTTATGTGCACGGTTTAACCTT
TTTATTGCTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATAGAGGCTAGTACGCATTTTGATGAAACTGAGT
ATGAATTAGCTAAAAAAAGTTCGGAATTGTTGCATCAACAGAAAATTTTAACTTCTCTACAGCAGCAATCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTACACGCTACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAAAAGCCTATTTTGCATTTACAGCTTACAGGTCATTTTGAAAAAACGAAGACAT
TTTTAACCGCACTTTTGGCTAATTCGTCACAGCTTTCAGTGAGTCGCTTGCAGTTTATCAAACCAGAAGACAACCCATTG
CAAACCGAAATCATTTTTCAGCTAGATAAGGAAACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

94.22

100

0.942
  comC Haemophilus influenzae Rd KW20

92.486

100

0.925

Multiple sequence alignment