Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GAPWK_RS04705 Genome accession   NZ_CP007445
Coordinates   1032562..1033083 (-) Length   173 a.a.
NCBI ID   WP_025315120.1    Uniprot ID   X2H798
Organism   Gilliamella apicola strain wkB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1027562..1038083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAPWK_RS04680 (GAPWK_0924) lpxK 1029098..1030105 (+) 1008 WP_025315115.1 tetraacyldisaccharide 4'-kinase -
  GAPWK_RS04685 (GAPWK_0925) - 1030109..1030294 (+) 186 WP_025315116.1 Trm112 family protein -
  GAPWK_RS04690 (GAPWK_0926) kdsB 1030315..1031079 (+) 765 WP_025315117.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GAPWK_RS04695 (GAPWK_0927) - 1031083..1031775 (+) 693 WP_025315118.1 DUF2461 domain-containing protein -
  GAPWK_RS04700 (GAPWK_0928) - 1031794..1032456 (-) 663 WP_038517210.1 MarC family NAAT transporter -
  GAPWK_RS04705 (GAPWK_0929) ssb 1032562..1033083 (-) 522 WP_025315120.1 single-stranded DNA-binding protein Machinery gene
  GAPWK_RS04710 (GAPWK_0930) corA 1033302..1034243 (+) 942 WP_025315121.1 magnesium/cobalt transporter CorA -
  GAPWK_RS04715 (GAPWK_0931) - 1034437..1035396 (+) 960 WP_038517213.1 glucokinase -
  GAPWK_RS04720 (GAPWK_0932) - 1035416..1035664 (+) 249 WP_080692428.1 YcgL domain-containing protein -
  GAPWK_RS04725 (GAPWK_0933) - 1035661..1036083 (+) 423 WP_038517215.1 YcgN family cysteine cluster protein -
  GAPWK_RS04730 (GAPWK_0934) - 1036124..1036681 (-) 558 WP_025315123.1 YggT family protein -
  GAPWK_RS04735 (GAPWK_0935) - 1036719..1037420 (-) 702 WP_025315124.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19008.91 Da        Isoelectric Point: 4.9746

>NTDB_id=119404 GAPWK_RS04705 WP_025315120.1 1032562..1033083(-) (ssb) [Gilliamella apicola strain wkB1]
MANRGINKVILVGNLGQDPEVRYMPNGNAVANFSVATSESWKDKQTGETRDRTEWHRVVVFGKLAEIAGEYIKKGTQVYL
EGQLQTRKWQDQSGQDRYTTEVVINPIGGTLQILGSRGNSNDSYDDGSQNWGQSANNISSAPAASSRQPNKNAPAPQPKA
PEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=119404 GAPWK_RS04705 WP_025315120.1 1032562..1033083(-) (ssb) [Gilliamella apicola strain wkB1]
ATGGCAAACCGAGGAATAAATAAAGTCATTTTAGTTGGTAATTTAGGGCAAGATCCTGAAGTCCGTTACATGCCAAATGG
AAATGCTGTAGCTAATTTTAGTGTAGCAACCTCAGAATCATGGAAAGATAAACAAACTGGTGAAACCCGTGATCGCACTG
AATGGCATCGAGTTGTCGTTTTTGGTAAATTAGCCGAAATTGCAGGTGAATACATCAAAAAAGGGACTCAAGTTTATCTT
GAAGGGCAACTGCAAACTCGAAAATGGCAAGACCAATCAGGACAAGATCGTTACACGACAGAAGTAGTGATTAATCCTAT
CGGTGGAACTTTACAAATTCTAGGTTCACGTGGAAACAGTAATGATAGTTATGATGATGGTTCTCAGAATTGGGGACAAA
GTGCTAATAATATTTCATCGGCACCAGCTGCATCATCTCGTCAACCAAATAAAAATGCACCCGCACCACAACCTAAAGCA
CCCGAACCTCCAATGGATTTTGATGACGACATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2H798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.791

100

0.618
  ssb Glaesserella parasuis strain SC1401

52.747

100

0.555
  ssb Neisseria gonorrhoeae MS11

49.724

100

0.52
  ssb Neisseria meningitidis MC58

49.721

100

0.514
  ssb Latilactobacillus sakei subsp. sakei 23K

35.593

100

0.364

Multiple sequence alignment