Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CH92_RS02155 Genome accession   NZ_CP007441
Coordinates   462641..464140 (-) Length   499 a.a.
NCBI ID   WP_025240162.1    Uniprot ID   W8R365
Organism   Stutzerimonas stutzeri strain 28a24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 457641..469140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH92_RS02145 (CH92_02200) - 458781..460418 (+) 1638 WP_025240160.1 bifunctional diguanylate cyclase/phosphodiesterase -
  CH92_RS02150 (CH92_02205) betT 460461..462425 (-) 1965 WP_025240161.1 choline BCCT transporter BetT -
  CH92_RS02155 (CH92_02210) comM 462641..464140 (-) 1500 WP_025240162.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CH92_RS02160 (CH92_02215) - 464174..464437 (-) 264 WP_025240163.1 accessory factor UbiK family protein -
  CH92_RS02165 (CH92_02220) glnK 464829..465167 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  CH92_RS02170 (CH92_02225) - 465291..466607 (+) 1317 WP_025240164.1 ammonium transporter -
  CH92_RS02175 (CH92_02230) - 466688..467941 (+) 1254 WP_025240165.1 ammonium transporter -
  CH92_RS02180 (CH92_02235) - 468039..468464 (+) 426 WP_025240166.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CH92_RS02185 (CH92_02240) sutA 468539..468868 (+) 330 WP_025240167.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53114.16 Da        Isoelectric Point: 8.2604

>NTDB_id=119339 CH92_RS02155 WP_025240162.1 462641..464140(-) (comM) [Stutzerimonas stutzeri strain 28a24]
MSLAIVHSRAQVGVEAPTVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQIPADRLDSLECLGELALSGALRPVQGVLPAALAARHAGRALLVPRANAEEASLASGLVVYAADHL
LEVAAHFNGVTPLEPFQAQGLLRQVLPYPDLADVQGQAAAKRGLLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLEE
QEALEVAAIQSVASQSPLAHWPQRPFRQPHHSASGPALVGGGSRPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GCIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSPDQIQRYRGKLSGPLLDRIDLHLTVAREATALNAPIAS
NETTRLVAEQVAAARRIQLRRQGCANAFLDLAGLRDHCQLQPDDQLWLERACERLGLSLRAAHRLLKVARTLADLQQAAF
IGRPHLAEALQYRPGSQTG

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=119339 CH92_RS02155 WP_025240162.1 462641..464140(-) (comM) [Stutzerimonas stutzeri strain 28a24]
ATGTCCCTTGCCATAGTTCATAGCCGCGCCCAGGTTGGCGTGGAAGCGCCCACCGTCACGGTGGAGGCGCACCTCGCCAA
TGGCCTGCCTTCCTTGGCATTGGTCGGTCTCCCGGAAACCGCCGTGAAGGAGAGCAAGGACCGCGTACGCAGCGCGATCC
TGACCTCCGGCTTCGATTTTCCCGCTCGCCGCATCACCTTGAACCTTGCGCCTGCCGATTTACCAAAAGACGGTGGCCGC
TTCGATCTGGCCATCGCGTTGGGCATTCTTGCGGCAAGCGGCCAGATACCGGCAGACCGCCTCGATAGCCTGGAATGCCT
AGGGGAACTCGCGTTGTCTGGAGCGTTACGCCCGGTCCAGGGCGTCTTGCCTGCCGCATTGGCGGCGCGGCATGCCGGGC
GCGCTCTGCTGGTGCCACGAGCCAATGCCGAGGAAGCCAGCCTGGCTTCAGGGTTGGTGGTCTACGCCGCCGACCACCTG
CTGGAAGTTGCGGCACACTTCAATGGCGTCACACCACTCGAGCCCTTTCAGGCTCAAGGGCTGTTGCGCCAGGTACTGCC
CTATCCGGATCTCGCCGATGTTCAGGGCCAAGCAGCGGCCAAACGAGGCCTTCTGGTGGCTGCAGCGGGTGCTCATAATC
TGTTGTTCTCCGGTCCACCCGGCACCGGCAAAACCTTGCTCGCCAGCCGACTGCCCGGCTTGCTTCCGCCGCTCGAAGAG
CAGGAAGCTCTCGAGGTGGCTGCAATTCAATCCGTCGCCAGCCAATCGCCGCTTGCACATTGGCCACAACGCCCGTTTCG
ACAGCCCCATCACAGTGCATCTGGCCCGGCACTGGTCGGCGGAGGGAGTCGGCCCAGGCCCGGCGAGATCACGTTGGCTC
ATCAGGGCGTCCTGTTCCTCGACGAGCTGCCGGAATTTGATCGCAAAGTATTGGAAGTGCTTCGCGAGCCGCTTGAGTCA
GGTTGCATCGTCATTGCCCGAGCCCGAGACAAAGTACGTTTCCCTGCAAGGTTCCAGTTGGTTGCCGCGATGAATCCATG
CCCCTGTGGATATCTGGGCGACCCCAGCGGGCGATGCCGCTGCTCACCTGATCAGATTCAGCGTTACCGGGGCAAGCTGT
CCGGTCCACTGCTGGATCGCATCGATCTGCATCTGACGGTCGCCCGTGAAGCCACGGCGCTGAACGCACCAATAGCCAGC
AATGAAACCACGCGACTGGTTGCCGAACAGGTGGCTGCGGCGCGACGCATCCAGCTGCGGCGCCAAGGTTGCGCCAATGC
CTTCCTCGACCTTGCAGGACTGCGCGATCACTGCCAACTGCAACCGGACGATCAGCTGTGGCTAGAGCGTGCCTGTGAGC
GCCTCGGTCTTTCGCTGCGAGCCGCGCACCGCCTTCTTAAGGTGGCTCGCACACTGGCGGATCTTCAGCAGGCGGCGTTC
ATTGGACGTCCACACCTGGCCGAGGCTCTGCAGTACCGCCCCGGCAGCCAAACCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8R365

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.374

99.198

0.569
  comM Vibrio campbellii strain DS40M4

57.172

99.198

0.567
  comM Glaesserella parasuis strain SC1401

55.689

100

0.559
  comM Haemophilus influenzae Rd KW20

55.289

100

0.555
  comM Legionella pneumophila str. Paris

51.008

99.399

0.507
  comM Legionella pneumophila strain ERS1305867

51.008

99.399

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

100

0.461

Multiple sequence alignment