Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   YSQ_RS01540 Genome accession   NZ_CP007183
Coordinates   311589..313151 (+) Length   520 a.a.
NCBI ID   WP_002779312.1    Uniprot ID   A0A1B3X8A3
Organism   Campylobacter coli RM1875     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306589..318151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSQ_RS01520 (YSQ_01535) ctsR 308707..309018 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  YSQ_RS01525 (YSQ_01540) ctsD 308996..310414 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  YSQ_RS01530 (YSQ_01545) ctsP 310407..311003 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  YSQ_RS01535 (YSQ_01550) - 311000..311596 (+) 597 WP_002779313.1 CDC27 family protein -
  YSQ_RS01540 (YSQ_01555) ctsE 311589..313151 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  YSQ_RS01545 (YSQ_01560) ctsF 313138..314313 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  YSQ_RS01550 (YSQ_01565) - 314310..315074 (-) 765 WP_002781157.1 TSUP family transporter -
  YSQ_RS01555 (YSQ_01570) - 315077..315841 (-) 765 WP_002781156.1 TIGR02757 family protein -
  YSQ_RS01560 (YSQ_01575) flgK 315858..317684 (-) 1827 WP_002781155.1 flagellar hook-associated protein FlgK -
  YSQ_RS01565 (YSQ_01580) - 317694..318128 (-) 435 WP_002781154.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59828.44 Da        Isoelectric Point: 5.6204

>NTDB_id=117202 YSQ_RS01540 WP_002779312.1 311589..313151(+) (ctsE) [Campylobacter coli RM1875]
MIERFLFEDYINGKITLEQIDREHKIDSEIFLKALASDKNISYSTLEELDLSLGEKFPCSFLFKFKILPILSKENTLHIA
SSKPCSLELLDEIRIFYEVKNIEVLIASEFKIMKFLYKLQVREKLKNLSTNLRLEWKENRSQDEQSCISQIFDFILDEIL
EFNPSDIHIEARENDTLIRFRVDGILREFACLEKDIYEALVFHIKFLSQLNVAESRKAQDGNFELKIKENRYDFRISSLP
LQNGESIVIRILKHNEEILDLENLNLGEKNLTILKKALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPI
EYKMPLIQQILLNPKAGLEFNNALRAILRQDPDIIMVGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTIDRLIDMSA
KPYLIASALRLVIAQRLVRKLCPKCKQKSTKVYEIKGDFFEAKGCEYCHHSGYQGRELISECLYIDEEIAQVIREGGYKN
KILELAKVKGFQSMFEQGLQKAKEGITSIDELLRVLNEAL

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=117202 YSQ_RS01540 WP_002779312.1 311589..313151(+) (ctsE) [Campylobacter coli RM1875]
ATGATTGAGCGATTTTTATTTGAAGATTATATTAACGGTAAAATCACCCTTGAGCAAATTGATCGTGAGCATAAAATCGA
TAGTGAAATTTTTCTAAAAGCTTTGGCTAGTGATAAAAATATTTCTTATTCTACTTTAGAGGAACTTGATCTTAGTTTGG
GTGAAAAATTTCCATGTAGTTTTCTTTTTAAATTTAAAATCTTGCCCATTTTAAGTAAAGAAAATACACTTCATATAGCA
AGCTCCAAACCTTGTTCTTTAGAGCTTTTAGATGAGATTAGAATTTTTTATGAAGTTAAGAATATAGAAGTTTTGATCGC
AAGCGAATTTAAGATTATGAAATTTTTATATAAACTTCAAGTTAGAGAAAAACTTAAAAATTTAAGCACCAATCTTAGAT
TAGAATGGAAAGAAAATAGAAGTCAAGATGAGCAAAGTTGTATCAGTCAAATTTTTGATTTTATACTCGATGAAATTCTT
GAATTTAATCCTAGCGATATACATATAGAAGCAAGAGAAAATGATACTTTGATAAGATTTAGAGTAGATGGAATTTTACG
CGAATTTGCTTGTCTTGAAAAAGATATTTATGAGGCTTTGGTTTTTCATATTAAATTTTTATCGCAGCTTAATGTTGCAG
AATCAAGAAAGGCTCAAGATGGAAATTTTGAGCTTAAAATCAAAGAAAATAGATATGATTTTAGGATTTCATCTTTGCCT
TTGCAAAATGGCGAAAGCATTGTGATAAGAATTTTAAAACACAACGAAGAAATTTTGGATTTAGAAAATTTAAATTTGGG
CGAAAAAAATCTTACAATTCTAAAAAAAGCCCTATACAACCCTTATGGAATGATTTTACTAACAGGTCCTACAGGAAGTG
GAAAAAGTACAAGTTTATATGCTTGTTTAAATGAGCTAAAAAGCATAGAAAAGAAAATAATTTCTGTGGAAGATCCTATA
GAATATAAAATGCCTTTAATTCAGCAAATTTTGCTAAATCCAAAAGCAGGACTTGAATTTAATAATGCCCTAAGAGCCAT
TTTAAGACAAGATCCTGATATTATCATGGTAGGAGAAATCAGAGATGAGGAGAGCCTTGATATAGCGATTAAGGCTTCCT
TAACGGGGCACTTGCTTTTAAGTACTTTGCATACAAATAATGCCATTTCTACCATAGATAGATTAATTGACATGAGTGCA
AAGCCTTATTTGATCGCTTCTGCTTTAAGGCTTGTCATTGCCCAGCGTTTAGTGCGCAAGCTTTGTCCTAAATGCAAGCA
AAAAAGCACTAAGGTTTATGAAATAAAAGGTGATTTTTTTGAAGCTAAAGGCTGCGAGTATTGTCATCATAGTGGATATC
AAGGTAGAGAACTCATCAGTGAGTGTTTATATATCGATGAGGAAATAGCTCAAGTTATTAGAGAGGGTGGTTATAAAAAT
AAAATTCTAGAGCTTGCTAAAGTAAAGGGTTTTCAAAGTATGTTTGAGCAAGGTTTGCAAAAAGCAAAAGAGGGTATAAC
TAGCATAGATGAGCTTTTAAGGGTACTTAATGAAGCTTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-123)

Type II/IV secretion system protein (T2SSE)

(155-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3X8A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

67.188

98.462

0.662
  pilB Acinetobacter baylyi ADP1

35.536

100

0.383
  pilB Legionella pneumophila strain ERS1305867

40.412

93.269

0.377

Multiple sequence alignment