Detailed information
Bioinformatically predicted
Overview
| Name | ctsP | Type | Machinery gene |
| Locus tag | YSQ_RS01530 | Genome accession | NZ_CP007183 |
| Coordinates | 310407..311003 (+) | Length | 198 a.a. |
| NCBI ID | WP_002779314.1 | Uniprot ID | A0A0Q2JMT7 |
| Organism | Campylobacter coli RM1875 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 305407..316003
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YSQ_RS01520 (YSQ_01535) | ctsR | 308707..309018 (+) | 312 | WP_002779316.1 | hypothetical protein | Machinery gene |
| YSQ_RS01525 (YSQ_01540) | ctsD | 308996..310414 (+) | 1419 | WP_002779315.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| YSQ_RS01530 (YSQ_01545) | ctsP | 310407..311003 (+) | 597 | WP_002779314.1 | ATP-binding protein | Machinery gene |
| YSQ_RS01535 (YSQ_01550) | - | 311000..311596 (+) | 597 | WP_002779313.1 | CDC27 family protein | - |
| YSQ_RS01540 (YSQ_01555) | ctsE | 311589..313151 (+) | 1563 | WP_002779312.1 | GspE/PulE family protein | Machinery gene |
| YSQ_RS01545 (YSQ_01560) | ctsF | 313138..314313 (+) | 1176 | WP_002781160.1 | type II secretion system F family protein | Machinery gene |
| YSQ_RS01550 (YSQ_01565) | - | 314310..315074 (-) | 765 | WP_002781157.1 | TSUP family transporter | - |
| YSQ_RS01555 (YSQ_01570) | - | 315077..315841 (-) | 765 | WP_002781156.1 | TIGR02757 family protein | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 23633.42 Da Isoelectric Point: 9.1569
>NTDB_id=117201 YSQ_RS01530 WP_002779314.1 310407..311003(+) (ctsP) [Campylobacter coli RM1875]
MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLALYHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGM
YSPNVLELIRIYSDEMSFVLSSHKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK
MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLALYHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGM
YSPNVLELIRIYSDEMSFVLSSHKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK
Nucleotide
Download Length: 597 bp
>NTDB_id=117201 YSQ_RS01530 WP_002779314.1 310407..311003(+) (ctsP) [Campylobacter coli RM1875]
ATGAATAATATAATTGCTTTTAGACAAGAATGTTTTGATCAAATCAATGCCTTATTAAAAAATAAAGCTTTGATTTTACT
TTGGGGTAAAAGCGGTAGTGGGAAAAGTGTTTTATTGCAAAGACTTGCGCTATATCATAATGAAGATTTTACCAATGAAA
TTTTTACAGATGAAAAAGATTTTCATCATTTTATACAAGATAAAAAACGAAAAATTATCATACTAGATGAAGTGGGGATG
TATAGTCCTAATGTATTAGAACTAATTCGGATTTATAGCGATGAAATGAGTTTTGTGCTTAGCTCGCATAAAAAAATCAA
TCTTTTTGAAGAGGAGTATTTTAAAAGTCGTTTTAGTGCTATTTTTTGGCTTCAAAAACCTGATATAAATGAATTAAGCA
ATTATATCAAAATGAAATTTAATCAAGACTTTCCCCAAAAATCTTTAAAATTTCTTATGAAAATTTATCAAGGAAATTTA
AGGTATTTAGACAAGATACTTCAAAGTTTTTGCGAATTAAACACCTATTTAAACAATAAAAAAAGTCAAGATTATATTTT
AAGACTAAGCGCATTAGAGCAGGGATTTTTAAAATGA
ATGAATAATATAATTGCTTTTAGACAAGAATGTTTTGATCAAATCAATGCCTTATTAAAAAATAAAGCTTTGATTTTACT
TTGGGGTAAAAGCGGTAGTGGGAAAAGTGTTTTATTGCAAAGACTTGCGCTATATCATAATGAAGATTTTACCAATGAAA
TTTTTACAGATGAAAAAGATTTTCATCATTTTATACAAGATAAAAAACGAAAAATTATCATACTAGATGAAGTGGGGATG
TATAGTCCTAATGTATTAGAACTAATTCGGATTTATAGCGATGAAATGAGTTTTGTGCTTAGCTCGCATAAAAAAATCAA
TCTTTTTGAAGAGGAGTATTTTAAAAGTCGTTTTAGTGCTATTTTTTGGCTTCAAAAACCTGATATAAATGAATTAAGCA
ATTATATCAAAATGAAATTTAATCAAGACTTTCCCCAAAAATCTTTAAAATTTCTTATGAAAATTTATCAAGGAAATTTA
AGGTATTTAGACAAGATACTTCAAAGTTTTTGCGAATTAAACACCTATTTAAACAATAAAAAAAGTCAAGATTATATTTT
AAGACTAAGCGCATTAGAGCAGGGATTTTTAAAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsP | Campylobacter jejuni subsp. jejuni 81-176 |
57.921 |
100 |
0.591 |