Detailed information NTG0117203

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: YSQ_RS01545
• Genome accession: NZ_CP007183
• Coordinates: 313138..314313 (+)
• Length: 391 a.a.
• NCBI ID: WP_002781160.1
• Uniprot ID: A0A0Q2ISE7
• Organism: Campylobacter coli RM1875
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 308138..319313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YSQ_RS01520 (YSQ_01535)	ctsR	308707..309018 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
YSQ_RS01525 (YSQ_01540)	ctsD	308996..310414 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
YSQ_RS01530 (YSQ_01545)	ctsP	310407..311003 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
YSQ_RS01535 (YSQ_01550)	-	311000..311596 (+)	597	WP_002779313.1	CDC27 family protein	-
YSQ_RS01540 (YSQ_01555)	ctsE	311589..313151 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
YSQ_RS01545 (YSQ_01560)	ctsF	313138..314313 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
YSQ_RS01550 (YSQ_01565)	-	314310..315074 (-)	765	WP_002781157.1	TSUP family transporter	-
YSQ_RS01555 (YSQ_01570)	-	315077..315841 (-)	765	WP_002781156.1	TIGR02757 family protein	-
YSQ_RS01560 (YSQ_01575)	flgK	315858..317684 (-)	1827	WP_002781155.1	flagellar hook-associated protein FlgK	-
YSQ_RS01565 (YSQ_01580)	-	317694..318128 (-)	435	WP_002781154.1	flagellar protein FlgN	-
YSQ_RS01570 (YSQ_01585)	-	318167..318364 (-)	198	WP_002781153.1	flagellar biosynthesis anti-sigma factor FlgM	-
YSQ_RS01575 (YSQ_01590)	-	318427..318768 (-)	342	WP_002781152.1	rod-binding protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45518.35 Da
• Isoelectric Point: 9.4461

>NTDB_id=117203 YSQ_RS01545 WP_002781160.1 313138..314313(+) (ctsF) [Campylobacter coli RM1875]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide

• Length: 1176 bp

>NTDB_id=117203 YSQ_RS01545 WP_002781160.1 313138..314313(+) (ctsF) [Campylobacter coli RM1875]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (262-381)

• Type II secretion system (T2SS), protein F (T2SSF) (59-178)

3D structure

• AlphaFold DB: A0A0Q2ISE7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	60.66	100	0.611