Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   YSU_RS01555 Genome accession   NZ_CP007179
Coordinates   312030..313592 (+) Length   520 a.a.
NCBI ID   WP_002779312.1    Uniprot ID   A0A1B3X8A3
Organism   Campylobacter coli RM5611     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307030..318592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSU_RS01535 (YSU_01550) ctsR 309148..309459 (+) 312 WP_002804858.1 hypothetical protein Machinery gene
  YSU_RS01540 (YSU_01555) ctsD 309437..310855 (+) 1419 WP_002804861.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  YSU_RS01545 (YSU_01560) ctsP 310848..311444 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  YSU_RS01550 (YSU_01565) ctsX 311441..312037 (+) 597 WP_002804867.1 CDC27 family protein Machinery gene
  YSU_RS01555 (YSU_01570) ctsE 312030..313592 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  YSU_RS01560 (YSU_01575) ctsF 313579..314754 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  YSU_RS01565 (YSU_01580) - 314751..315515 (-) 765 WP_002784060.1 TSUP family transporter -
  YSU_RS01570 (YSU_01585) - 315518..316282 (-) 765 WP_002781156.1 TIGR02757 family protein -
  YSU_RS01575 (YSU_01590) flgK 316299..318125 (-) 1827 WP_002779264.1 flagellar hook-associated protein FlgK -
  YSU_RS01580 (YSU_01595) - 318135..318569 (-) 435 WP_002779263.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59828.44 Da        Isoelectric Point: 5.6204

>NTDB_id=117155 YSU_RS01555 WP_002779312.1 312030..313592(+) (ctsE) [Campylobacter coli RM5611]
MIERFLFEDYINGKITLEQIDREHKIDSEIFLKALASDKNISYSTLEELDLSLGEKFPCSFLFKFKILPILSKENTLHIA
SSKPCSLELLDEIRIFYEVKNIEVLIASEFKIMKFLYKLQVREKLKNLSTNLRLEWKENRSQDEQSCISQIFDFILDEIL
EFNPSDIHIEARENDTLIRFRVDGILREFACLEKDIYEALVFHIKFLSQLNVAESRKAQDGNFELKIKENRYDFRISSLP
LQNGESIVIRILKHNEEILDLENLNLGEKNLTILKKALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPI
EYKMPLIQQILLNPKAGLEFNNALRAILRQDPDIIMVGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTIDRLIDMSA
KPYLIASALRLVIAQRLVRKLCPKCKQKSTKVYEIKGDFFEAKGCEYCHHSGYQGRELISECLYIDEEIAQVIREGGYKN
KILELAKVKGFQSMFEQGLQKAKEGITSIDELLRVLNEAL

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=117155 YSU_RS01555 WP_002779312.1 312030..313592(+) (ctsE) [Campylobacter coli RM5611]
ATGATTGAGCGATTTTTATTTGAAGATTATATTAATGGTAAAATCACCCTTGAGCAAATTGATCGTGAGCATAAAATCGA
TAGTGAAATTTTTCTAAAAGCTTTGGCTAGTGATAAAAATATTTCTTATTCTACTTTAGAGGAACTTGATCTTAGTTTGG
GTGAAAAATTTCCATGTAGTTTTCTTTTTAAATTTAAAATCTTGCCCATTTTAAGTAAAGAAAATACACTTCATATAGCA
AGCTCCAAACCTTGTTCTTTAGAGCTTTTAGATGAGATTAGAATTTTTTATGAAGTTAAGAATATAGAAGTTTTGATCGC
AAGCGAATTTAAGATTATGAAATTTTTATATAAACTTCAAGTTAGAGAAAAACTTAAAAATTTAAGCACCAATCTTAGAT
TAGAATGGAAAGAAAATAGAAGTCAAGATGAGCAAAGTTGTATCAGTCAAATTTTTGATTTTATACTCGATGAAATTCTT
GAATTTAATCCTAGCGATATACATATAGAAGCAAGAGAAAATGATACTTTGATAAGATTTAGAGTAGATGGAATTTTACG
CGAATTTGCTTGTCTTGAAAAAGATATTTATGAGGCTTTGGTTTTTCATATTAAATTTTTATCGCAGCTTAATGTTGCAG
AATCAAGAAAGGCTCAAGATGGAAATTTTGAGCTTAAAATCAAAGAAAATAGATATGATTTTAGGATTTCATCTTTGCCT
TTGCAAAATGGCGAAAGCATTGTGATAAGAATTTTAAAACACAACGAAGAAATTTTGGATTTAGAAAATTTAAATTTGGG
CGAAAAAAATCTTACAATTCTAAAAAAAGCCCTATACAACCCTTATGGAATGATTTTACTAACAGGTCCTACAGGAAGTG
GAAAAAGTACAAGTTTATATGCTTGTTTAAATGAGCTAAAAAGCATAGAAAAGAAAATAATTTCTGTGGAAGATCCTATA
GAATATAAAATGCCTTTAATTCAGCAAATTTTGCTAAATCCAAAAGCAGGACTTGAATTTAATAATGCCCTAAGAGCCAT
TTTAAGACAAGATCCTGATATTATCATGGTAGGAGAAATCAGAGATGAGGAGAGCCTTGATATAGCGATTAAGGCTTCCT
TAACGGGGCACTTGCTTTTAAGTACTTTGCATACAAATAATGCCATTTCTACCATAGATAGATTAATTGACATGAGTGCA
AAGCCTTATTTGATCGCTTCTGCTTTAAGGCTTGTCATTGCCCAGCGTTTAGTGCGCAAGCTTTGTCCTAAATGCAAGCA
AAAAAGCACTAAGGTTTATGAAATAAAAGGTGATTTTTTTGAAGCTAAAGGCTGCGAGTATTGTCATCATAGTGGATATC
AAGGTAGAGAACTCATCAGTGAGTGTTTATATATCGATGAGGAAATAGCTCAAGTTATTAGAGAGGGTGGTTATAAAAAT
AAAATTCTAGAGCTTGCTAAAGTAAAGGGTTTTCAAAGTATGTTTGAGCAAGGTTTGCAAAAAGCAAAAGAGGGTATAAC
TAGCATAGATGAGCTTTTAAGGGTACTTAATGAAGCTTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-123)

Type II/IV secretion system protein (T2SSE)

(155-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3X8A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

67.188

98.462

0.662
  pilB Acinetobacter baylyi ADP1

35.536

100

0.383
  pilB Legionella pneumophila strain ERS1305867

40.412

93.269

0.377

Multiple sequence alignment