Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   YSU_RS01535 Genome accession   NZ_CP007179
Coordinates   309148..309459 (+) Length   103 a.a.
NCBI ID   WP_002804858.1    Uniprot ID   -
Organism   Campylobacter coli RM5611     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304148..314459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSU_RS01525 (YSU_01540) - 304822..305460 (+) 639 WP_002804856.1 HAD family hydrolase -
  YSU_RS01530 (YSU_01545) nifJ 305564..309124 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  YSU_RS01535 (YSU_01550) ctsR 309148..309459 (+) 312 WP_002804858.1 hypothetical protein Machinery gene
  YSU_RS01540 (YSU_01555) ctsD 309437..310855 (+) 1419 WP_002804861.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  YSU_RS01545 (YSU_01560) ctsP 310848..311444 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  YSU_RS01550 (YSU_01565) ctsX 311441..312037 (+) 597 WP_002804867.1 CDC27 family protein Machinery gene
  YSU_RS01555 (YSU_01570) ctsE 312030..313592 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12239.28 Da        Isoelectric Point: 6.3244

>NTDB_id=117151 YSU_RS01535 WP_002804858.1 309148..309459(+) (ctsR) [Campylobacter coli RM5611]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDIATKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=117151 YSU_RS01535 WP_002804858.1 309148..309459(+) (ctsR) [Campylobacter coli RM5611]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTGCTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment