Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   YSU_RS01550 Genome accession   NZ_CP007179
Coordinates   311441..312037 (+) Length   198 a.a.
NCBI ID   WP_002804867.1    Uniprot ID   -
Organism   Campylobacter coli RM5611     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306441..317037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSU_RS01535 (YSU_01550) ctsR 309148..309459 (+) 312 WP_002804858.1 hypothetical protein Machinery gene
  YSU_RS01540 (YSU_01555) ctsD 309437..310855 (+) 1419 WP_002804861.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  YSU_RS01545 (YSU_01560) ctsP 310848..311444 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  YSU_RS01550 (YSU_01565) ctsX 311441..312037 (+) 597 WP_002804867.1 CDC27 family protein Machinery gene
  YSU_RS01555 (YSU_01570) ctsE 312030..313592 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  YSU_RS01560 (YSU_01575) ctsF 313579..314754 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  YSU_RS01565 (YSU_01580) - 314751..315515 (-) 765 WP_002784060.1 TSUP family transporter -
  YSU_RS01570 (YSU_01585) - 315518..316282 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23788.26 Da        Isoelectric Point: 5.2295

>NTDB_id=117154 YSU_RS01550 WP_002804867.1 311441..312037(+) (ctsX) [Campylobacter coli RM5611]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIVCMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=117154 YSU_RS01550 WP_002804867.1 311441..312037(+) (ctsX) [Campylobacter coli RM5611]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGTATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterproScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

52.332

97.475

0.51

Multiple sequence alignment