Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACOQOE_RS01930 Genome accession   NZ_OZ245004
Coordinates   414015..415529 (+) Length   504 a.a.
NCBI ID   WP_420554773.1    Uniprot ID   -
Organism   MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 409015..420529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQOE_RS01905 glnK 409466..409804 (-) 339 WP_067869806.1 P-II family nitrogen regulator -
  ACOQOE_RS01910 - 410001..411257 (-) 1257 WP_420554771.1 ammonium transporter -
  ACOQOE_RS01915 - 411294..411632 (-) 339 WP_067869800.1 P-II family nitrogen regulator -
  ACOQOE_RS01920 - 411934..412191 (+) 258 WP_067869797.1 accessory factor UbiK family protein -
  ACOQOE_RS01925 - 412267..413913 (+) 1647 WP_420554772.1 diguanylate cyclase domain-containing protein -
  ACOQOE_RS01930 comM 414015..415529 (+) 1515 WP_420554773.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACOQOE_RS01935 - 415581..417299 (-) 1719 WP_420554774.1 EAL domain-containing protein -
  ACOQOE_RS01940 rep 417560..419572 (+) 2013 WP_420554775.1 DNA helicase Rep -
  ACOQOE_RS01945 - 419640..420059 (-) 420 WP_067869781.1 c-type cytochrome -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54579.81 Da        Isoelectric Point: 7.2071

>NTDB_id=1171211 ACOQOE_RS01930 WP_420554773.1 414015..415529(+) (comM) [MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764]
MSLAIVYTRAQVGIDAPLVTVEVHLSGGLPSFSIVGLPETAVKESRERVRSALINSGYDFPQRRITVNLAPADLPKEGGR
YDLAVAIGILAASGQLPVEPLKSLELIGELALSGELRPVAGVLPVALACREVGRGLFLPLSNGDDATLASGLSVYPASHL
LDVCAHLKAEQLINCAVANPRTHTYSAVYPDLNDVKGQLQAKRALEIAAAGSHNLLLVGPPGSGKSMLANRLPGLLPEMT
ESERLQVASIHSIVQRSGGEGLICQRPFRAPHHTASSVALVGGGGNPKPGEISLAHQGVLFLDELPEFSRKVLEVLREPI
ESGEILISRAARQSVFPARFQLVTAMNPCPCGYYNDGTERCRCSPDQVRRYQSRVSGPLLDRIDLQLSVQALSQKELMAY
PDSEETSEQVRERVILARSEQMERQGYPNQMLEGKQLEQICCISDLDKDMLAKALEKLQLSARAYHRVLRVARTIADLAG
AEKVESKHLLEALSYRVSARALLR

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1171211 ACOQOE_RS01930 WP_420554773.1 414015..415529(+) (comM) [MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764]
ATGTCATTAGCGATTGTTTATACCCGTGCGCAGGTGGGGATTGATGCTCCACTTGTGACCGTTGAGGTCCACCTATCGGG
TGGGCTACCTAGTTTTTCAATAGTGGGCCTGCCTGAAACGGCGGTGAAAGAGAGTCGAGAACGGGTCCGCAGTGCTTTAA
TAAATTCTGGATATGATTTTCCTCAACGTAGAATTACAGTAAATCTCGCGCCTGCAGATCTTCCTAAGGAGGGTGGGCGT
TATGATCTTGCTGTCGCCATTGGTATTTTAGCTGCGAGTGGCCAATTACCGGTGGAGCCCCTGAAATCCCTAGAGCTGAT
TGGTGAACTTGCTCTTTCTGGTGAGCTCAGACCTGTTGCGGGTGTATTGCCTGTAGCACTTGCTTGTCGTGAGGTTGGTC
GGGGTTTGTTTCTTCCTTTGTCCAATGGAGATGATGCAACGCTTGCCTCAGGGTTGAGTGTTTATCCTGCTTCTCATCTG
TTGGATGTTTGCGCTCATTTAAAAGCAGAGCAATTGATTAACTGTGCGGTCGCTAATCCCAGAACGCATACATATAGTGC
AGTCTATCCCGACCTGAATGATGTTAAGGGGCAGCTTCAAGCGAAAAGGGCTCTAGAGATTGCAGCGGCGGGTTCGCATA
ACCTTTTGTTAGTGGGACCTCCTGGTAGTGGTAAGAGTATGTTAGCGAATCGTTTACCGGGTTTACTTCCGGAAATGACA
GAGTCTGAACGTTTACAGGTGGCTTCAATACACTCGATTGTTCAACGTAGTGGCGGTGAAGGACTTATCTGTCAGCGGCC
TTTTCGTGCGCCACATCACACCGCATCCTCTGTTGCTTTGGTGGGTGGGGGTGGAAATCCGAAGCCGGGTGAGATCTCTC
TCGCTCACCAAGGGGTTTTGTTCTTAGATGAGCTGCCTGAGTTTAGTCGTAAGGTTTTAGAGGTGCTGCGTGAGCCTATT
GAATCGGGTGAGATCTTAATTTCTCGCGCTGCCCGTCAATCTGTATTCCCAGCTCGATTTCAATTAGTTACCGCAATGAA
TCCTTGTCCATGTGGTTACTACAATGATGGTACTGAGCGTTGCCGTTGTAGTCCTGATCAAGTACGACGTTATCAGTCCC
GAGTATCGGGCCCATTGTTGGATCGTATTGACTTGCAGCTAAGTGTTCAAGCCTTGTCACAGAAAGAGCTCATGGCCTAC
CCTGATTCTGAAGAAACAAGTGAGCAGGTAAGAGAACGCGTTATTCTTGCAAGATCAGAACAGATGGAACGCCAAGGCTA
CCCAAACCAGATGTTGGAGGGTAAACAGCTTGAACAGATCTGTTGTATTAGTGATTTAGACAAAGATATGTTGGCTAAGG
CGTTGGAGAAACTACAGTTGTCAGCTCGTGCGTATCATCGTGTTTTAAGGGTGGCGCGAACCATTGCGGATCTTGCTGGT
GCGGAAAAGGTGGAGAGTAAGCATCTACTGGAAGCGTTGAGCTATCGAGTATCTGCTAGGGCTTTATTAAGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.238

100

0.563
  comM Glaesserella parasuis strain SC1401

55.03

100

0.554
  comM Vibrio cholerae strain A1552

55.378

99.603

0.552
  comM Vibrio campbellii strain DS40M4

53.984

99.603

0.538
  comM Legionella pneumophila str. Paris

51.904

99.008

0.514
  comM Legionella pneumophila strain ERS1305867

51.904

99.008

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.508

100

0.462

Multiple sequence alignment