Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOQN4_RS08900 Genome accession   NZ_OZ244735
Coordinates   1728437..1728949 (+) Length   170 a.a.
NCBI ID   WP_153714325.1    Uniprot ID   -
Organism   MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1723437..1733949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQN4_RS08885 - 1723566..1724117 (+) 552 WP_153714328.1 PQQ-dependent catabolism-associated CXXCW motif protein -
  ACOQN4_RS08890 uvrA 1724114..1726957 (-) 2844 WP_153714327.1 excinuclease ABC subunit UvrA -
  ACOQN4_RS08895 - 1727076..1728407 (+) 1332 WP_420550391.1 MFS transporter -
  ACOQN4_RS08900 ssb 1728437..1728949 (+) 513 WP_153714325.1 single-stranded DNA-binding protein Machinery gene
  ACOQN4_RS08905 - 1728999..1729907 (+) 909 WP_153714324.1 SDR family oxidoreductase -
  ACOQN4_RS08910 - 1729904..1730053 (+) 150 WP_153714323.1 hypothetical protein -
  ACOQN4_RS08915 ideA 1730028..1730720 (+) 693 WP_420550392.1 endonuclease Regulator
  ACOQN4_RS08920 - 1730717..1731139 (-) 423 WP_420550393.1 DsrE family protein -
  ACOQN4_RS08925 fabB 1731329..1732537 (-) 1209 WP_420550394.1 beta-ketoacyl-ACP synthase I -
  ACOQN4_RS08930 fabA 1732563..1733078 (-) 516 WP_153714319.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18240.22 Da        Isoelectric Point: 4.9561

>NTDB_id=1171118 ACOQN4_RS08900 WP_153714325.1 1728437..1728949(+) (ssb) [MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8]
MARGINKVILVGNLGNDPEMRATNNGSQIANLSIATSESWRDKNTGEMQERTEWHRVVFFNRLAEICGQYLKKGSKVYVE
GSLRTRSWDDAQSGQKRYTTEIVGGEMQMLDGRGDNMGGGAPMGGGYQQNNAPQAPSAPRQAAPAPAPAQAASAPPPGFA
DDIGDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1171118 ACOQN4_RS08900 WP_153714325.1 1728437..1728949(+) (ssb) [MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8]
ATGGCACGAGGCATTAATAAGGTAATTTTGGTGGGCAATCTGGGTAACGACCCGGAAATGCGCGCAACCAACAACGGCTC
ACAGATTGCGAATTTGTCGATTGCGACGAGCGAATCATGGCGTGACAAGAACACCGGCGAAATGCAGGAACGGACCGAGT
GGCATCGCGTGGTGTTCTTTAATCGGTTGGCCGAAATTTGCGGTCAGTACCTGAAAAAAGGCAGCAAGGTCTACGTCGAG
GGCTCACTGCGTACCCGTTCGTGGGATGACGCCCAGTCCGGTCAGAAACGCTACACCACGGAAATCGTCGGCGGTGAAAT
GCAAATGCTGGATGGCCGTGGCGACAACATGGGCGGTGGCGCACCCATGGGCGGCGGTTATCAGCAAAACAATGCACCCC
AGGCGCCGTCGGCTCCTCGTCAGGCTGCACCGGCGCCCGCTCCGGCACAAGCGGCATCGGCACCGCCGCCTGGCTTTGCG
GATGACATTGGTGACGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.618
  ssb Vibrio cholerae strain A1552

51.366

100

0.553
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.488
  ssb Neisseria meningitidis MC58

46.369

100

0.488

Multiple sequence alignment