Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   ACOQN4_RS08915 Genome accession   NZ_OZ244735
Coordinates   1730028..1730720 (+) Length   230 a.a.
NCBI ID   WP_420550392.1    Uniprot ID   -
Organism   MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1725028..1735720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQN4_RS08895 - 1727076..1728407 (+) 1332 WP_420550391.1 MFS transporter -
  ACOQN4_RS08900 ssb 1728437..1728949 (+) 513 WP_153714325.1 single-stranded DNA-binding protein Machinery gene
  ACOQN4_RS08905 - 1728999..1729907 (+) 909 WP_153714324.1 SDR family oxidoreductase -
  ACOQN4_RS08910 - 1729904..1730053 (+) 150 WP_153714323.1 hypothetical protein -
  ACOQN4_RS08915 ideA 1730028..1730720 (+) 693 WP_420550392.1 endonuclease Regulator
  ACOQN4_RS08920 - 1730717..1731139 (-) 423 WP_420550393.1 DsrE family protein -
  ACOQN4_RS08925 fabB 1731329..1732537 (-) 1209 WP_420550394.1 beta-ketoacyl-ACP synthase I -
  ACOQN4_RS08930 fabA 1732563..1733078 (-) 516 WP_153714319.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  ACOQN4_RS08935 - 1733224..1734660 (-) 1437 WP_420550395.1 OmpP1/FadL family transporter -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26671.33 Da        Isoelectric Point: 9.3991

>NTDB_id=1171119 ACOQN4_RS08915 WP_420550392.1 1730028..1730720(+) (ideA) [MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8]
MPLTPRLISALLALSSWLATADDSVPWYTAMKRDATIVHAFDTRTFYCGCRFFDRRINAAACGYEIRKQPERGRRMEWEH
VMPAWQLGRQRACWRDGKRKGCERNDPEYLRMATDLHNLVPSVGELNGDRSNFPFGNIRGERRVYGACDFEVDFKARKAE
PPAHRQGDIARIYFYMRDRYGLLLGRSQTYLLTQWAAQDPVDQWERVRNQRIARIQGNANCYVGGCIPGN

Nucleotide


Download         Length: 693 bp        

>NTDB_id=1171119 ACOQN4_RS08915 WP_420550392.1 1730028..1730720(+) (ideA) [MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8]
ATGCCCTTAACGCCCCGACTGATTAGCGCGCTATTGGCATTGAGCTCGTGGCTGGCGACGGCGGACGACTCGGTGCCCTG
GTACACCGCGATGAAGCGTGACGCGACCATCGTGCACGCCTTCGACACCCGTACATTTTATTGTGGCTGCCGGTTTTTCG
ATCGGCGAATCAATGCTGCGGCGTGCGGCTATGAAATTCGCAAACAACCCGAACGTGGCCGGCGCATGGAATGGGAGCAC
GTGATGCCAGCCTGGCAGCTGGGTCGCCAGCGCGCGTGTTGGCGCGACGGCAAGCGCAAGGGTTGCGAGCGTAATGATCC
TGAGTATTTGCGCATGGCCACGGATTTGCACAACCTGGTGCCCTCGGTTGGCGAGTTGAATGGCGATCGTTCGAACTTTC
CGTTCGGTAACATACGCGGTGAACGCCGGGTCTACGGCGCCTGCGATTTTGAAGTCGACTTTAAGGCCCGCAAAGCCGAG
CCGCCGGCGCACCGGCAGGGTGATATCGCGCGTATCTATTTCTACATGCGCGACCGCTACGGGTTGTTGTTGGGCCGCTC
GCAGACCTATTTGTTAACGCAGTGGGCGGCGCAGGATCCGGTCGATCAGTGGGAGCGCGTGCGCAACCAGCGCATTGCCC
GGATCCAGGGCAATGCGAATTGCTATGTTGGCGGCTGTATTCCGGGCAACTAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(60-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

58.85

98.261

0.578
  dns Aliivibrio fischeri ES114

45.536

97.391

0.443
  dns Vibrio parahaemolyticus RIMD 2210633

47.418

92.609

0.439
  dns Vibrio cholerae strain A1552

46.269

87.391

0.404

Multiple sequence alignment