Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACOQN4_RS05310 | Genome accession | NZ_OZ244735 |
| Coordinates | 1036375..1037493 (-) | Length | 372 a.a. |
| NCBI ID | WP_153712739.1 | Uniprot ID | - |
| Organism | MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1031375..1042493
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOQN4_RS05280 | - | 1031811..1032647 (+) | 837 | WP_153712745.1 | TonB family protein | - |
| ACOQN4_RS05285 | - | 1032644..1033198 (+) | 555 | WP_420551087.1 | YqgE/AlgH family protein | - |
| ACOQN4_RS05290 | ruvX | 1033195..1033608 (+) | 414 | WP_153712743.1 | Holliday junction resolvase RuvX | - |
| ACOQN4_RS05295 | - | 1033652..1034620 (+) | 969 | WP_153712742.1 | aspartate carbamoyltransferase catalytic subunit | - |
| ACOQN4_RS05300 | - | 1034617..1035498 (+) | 882 | WP_420551088.1 | dihydroorotase | - |
| ACOQN4_RS05305 | - | 1035463..1036302 (-) | 840 | WP_420551089.1 | MBL fold metallo-hydrolase | - |
| ACOQN4_RS05310 | pilU | 1036375..1037493 (-) | 1119 | WP_153712739.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACOQN4_RS05315 | pilT | 1037503..1038540 (-) | 1038 | WP_420551090.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACOQN4_RS05320 | - | 1038572..1039270 (+) | 699 | WP_420551091.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACOQN4_RS05325 | proC | 1039267..1040067 (+) | 801 | WP_420551092.1 | pyrroline-5-carboxylate reductase | - |
| ACOQN4_RS05330 | - | 1040091..1040672 (+) | 582 | WP_420551093.1 | YggT family protein | - |
| ACOQN4_RS05335 | metX | 1040673..1041767 (+) | 1095 | WP_153712734.1 | homoserine O-succinyltransferase MetX | - |
| ACOQN4_RS05340 | metW | 1041764..1042363 (+) | 600 | WP_420551094.1 | methionine biosynthesis protein MetW | - |
Sequence
Protein
Download Length: 372 a.a. Molecular weight: 40982.14 Da Isoelectric Point: 7.3072
>NTDB_id=1171106 ACOQN4_RS05310 WP_153712739.1 1036375..1037493(-) (pilU) [MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8]
MKTAFHQLLVEMGRLGASDLFLSVGAPPSLKINGRMVQVGDQVMQSPALLEMIHDVIPAPAKRRFEAEREANFAFAPDGL
PRFRANAFFQRNTPSMVIRQIRADVPTRMELGLPPIIDELSLLKRGIVFVVGATGTGKSTTLASMVHQRNLFGSGHIITV
EDPIEFTHKHGGCIVTQREVGVDTDSFEAALTNTLRQAPDCIVIGEIRSKETMQQAITFAETGHLCLATLHANNANQAIE
RILHFFPSDEHDRIRLDLSLNLKAIVAQQLMPNVNRNGMALACEVLLNSPLVSEKIRTNEIHVLKAIMAKGGNEGMQTFD
QSLFQLYRDQRISYESALSHADSVNDLRLKIKLSRGSAPTGEGEFARAGLKD
MKTAFHQLLVEMGRLGASDLFLSVGAPPSLKINGRMVQVGDQVMQSPALLEMIHDVIPAPAKRRFEAEREANFAFAPDGL
PRFRANAFFQRNTPSMVIRQIRADVPTRMELGLPPIIDELSLLKRGIVFVVGATGTGKSTTLASMVHQRNLFGSGHIITV
EDPIEFTHKHGGCIVTQREVGVDTDSFEAALTNTLRQAPDCIVIGEIRSKETMQQAITFAETGHLCLATLHANNANQAIE
RILHFFPSDEHDRIRLDLSLNLKAIVAQQLMPNVNRNGMALACEVLLNSPLVSEKIRTNEIHVLKAIMAKGGNEGMQTFD
QSLFQLYRDQRISYESALSHADSVNDLRLKIKLSRGSAPTGEGEFARAGLKD
Nucleotide
Download Length: 1119 bp
>NTDB_id=1171106 ACOQN4_RS05310 WP_153712739.1 1036375..1037493(-) (pilU) [MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8]
GTGAAAACTGCTTTCCATCAATTGTTGGTCGAAATGGGGCGCCTGGGGGCGTCGGATTTGTTTCTGTCGGTTGGCGCGCC
GCCGTCGCTGAAAATTAACGGCCGCATGGTCCAGGTGGGCGATCAGGTGATGCAGAGCCCTGCGCTGTTGGAGATGATTC
ACGATGTTATTCCGGCGCCAGCCAAGCGCCGGTTCGAGGCTGAGCGAGAGGCCAACTTTGCCTTTGCCCCGGACGGATTG
CCGCGCTTTAGGGCGAATGCGTTTTTTCAGCGCAATACGCCAAGCATGGTGATTCGCCAAATTCGTGCCGACGTGCCAAC
CCGAATGGAGTTGGGGCTGCCGCCGATTATTGACGAGCTGTCGCTGTTAAAACGCGGCATTGTGTTCGTGGTCGGTGCCA
CCGGCACTGGTAAGTCGACTACGCTGGCGAGCATGGTTCATCAGCGCAACCTGTTTGGGTCCGGGCACATCATCACGGTC
GAGGATCCGATCGAATTTACCCACAAACACGGCGGTTGCATCGTCACCCAGCGCGAAGTGGGGGTCGACACCGACTCGTT
CGAGGCGGCGCTGACCAACACGCTGCGCCAGGCCCCGGACTGCATTGTGATTGGCGAAATTCGTTCGAAGGAAACCATGC
AACAGGCGATTACCTTTGCCGAAACCGGGCACCTGTGTCTGGCGACCTTGCACGCCAACAATGCCAACCAGGCGATCGAG
CGGATCCTGCACTTTTTCCCCAGCGACGAGCACGACCGGATTCGCTTGGATTTGTCGCTAAACCTAAAAGCCATTGTCGC
CCAGCAACTGATGCCCAACGTCAATCGCAACGGCATGGCGCTGGCCTGTGAAGTGCTGCTGAATTCGCCGCTGGTCAGCG
AAAAAATCCGTACCAACGAGATTCATGTGTTGAAAGCGATCATGGCCAAGGGTGGCAATGAGGGCATGCAGACCTTTGAT
CAGTCGCTGTTCCAGCTCTACCGAGACCAGCGCATCAGCTACGAGTCGGCGCTGTCGCACGCGGACAGCGTCAATGATTT
GCGTCTGAAAATTAAACTCAGTCGGGGCAGTGCGCCGACCGGGGAGGGCGAGTTTGCGCGCGCCGGATTGAAGGACTAA
GTGAAAACTGCTTTCCATCAATTGTTGGTCGAAATGGGGCGCCTGGGGGCGTCGGATTTGTTTCTGTCGGTTGGCGCGCC
GCCGTCGCTGAAAATTAACGGCCGCATGGTCCAGGTGGGCGATCAGGTGATGCAGAGCCCTGCGCTGTTGGAGATGATTC
ACGATGTTATTCCGGCGCCAGCCAAGCGCCGGTTCGAGGCTGAGCGAGAGGCCAACTTTGCCTTTGCCCCGGACGGATTG
CCGCGCTTTAGGGCGAATGCGTTTTTTCAGCGCAATACGCCAAGCATGGTGATTCGCCAAATTCGTGCCGACGTGCCAAC
CCGAATGGAGTTGGGGCTGCCGCCGATTATTGACGAGCTGTCGCTGTTAAAACGCGGCATTGTGTTCGTGGTCGGTGCCA
CCGGCACTGGTAAGTCGACTACGCTGGCGAGCATGGTTCATCAGCGCAACCTGTTTGGGTCCGGGCACATCATCACGGTC
GAGGATCCGATCGAATTTACCCACAAACACGGCGGTTGCATCGTCACCCAGCGCGAAGTGGGGGTCGACACCGACTCGTT
CGAGGCGGCGCTGACCAACACGCTGCGCCAGGCCCCGGACTGCATTGTGATTGGCGAAATTCGTTCGAAGGAAACCATGC
AACAGGCGATTACCTTTGCCGAAACCGGGCACCTGTGTCTGGCGACCTTGCACGCCAACAATGCCAACCAGGCGATCGAG
CGGATCCTGCACTTTTTCCCCAGCGACGAGCACGACCGGATTCGCTTGGATTTGTCGCTAAACCTAAAAGCCATTGTCGC
CCAGCAACTGATGCCCAACGTCAATCGCAACGGCATGGCGCTGGCCTGTGAAGTGCTGCTGAATTCGCCGCTGGTCAGCG
AAAAAATCCGTACCAACGAGATTCATGTGTTGAAAGCGATCATGGCCAAGGGTGGCAATGAGGGCATGCAGACCTTTGAT
CAGTCGCTGTTCCAGCTCTACCGAGACCAGCGCATCAGCTACGAGTCGGCGCTGTCGCACGCGGACAGCGTCAATGATTT
GCGTCTGAAAATTAAACTCAGTCGGGGCAGTGCGCCGACCGGGGAGGGCGAGTTTGCGCGCGCCGGATTGAAGGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
55.587 |
96.237 |
0.535 |
| pilU | Acinetobacter baylyi ADP1 |
55.556 |
94.355 |
0.524 |
| pilU | Vibrio cholerae strain A1552 |
54.706 |
91.398 |
0.5 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.638 |
87.634 |
0.374 |