Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACOFKU_RS13215 Genome accession   NZ_OZ241361
Coordinates   2866431..2867114 (+) Length   227 a.a.
NCBI ID   WP_419812614.1    Uniprot ID   -
Organism   MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2863849..2871203 2866431..2867114 within 0


Gene organization within MGE regions


Location: 2863849..2871203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKU_RS13205 - 2863849..2865735 (-) 1887 WP_419812612.1 Mu transposase C-terminal domain-containing protein -
  ACOFKU_RS13210 - 2865732..2866391 (-) 660 WP_419812613.1 TnsA endonuclease N-terminal domain-containing protein -
  ACOFKU_RS13215 comM 2866431..2867114 (+) 684 WP_419812614.1 ATP-binding protein Machinery gene
  ACOFKU_RS13220 - 2867273..2868886 (-) 1614 WP_419812615.1 EAL domain-containing protein -
  ACOFKU_RS13225 rep 2869131..2871203 (+) 2073 WP_419812616.1 DNA helicase Rep -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25366.94 Da        Isoelectric Point: 7.9552

>NTDB_id=1170832 ACOFKU_RS13215 WP_419812614.1 2866431..2867114(+) (comM) [MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96]
MSRTYSGGGKPKPGEISLAHGGVLFLDELPEYSRKVLDVLREPLESGRIVISRANRSMTYPANFQLIAAMNPCPCGYFGD
PSGRCQCTTDQIRRYQGQASGPLLDRIDLHVEVPPIPTAMLQQAAQGDSTTSVQQRVMQARERQLARQGCINAELSGDVR
DQVCALQESDREWLLSAIETLNLSARAYHRVLKIARTIADLQVKESIERPHLLEALSYRTIDRYLQK

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1170832 ACOFKU_RS13215 WP_419812614.1 2866431..2867114(+) (comM) [MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96]
ATGTCTAGAACTTACAGCGGTGGTGGTAAACCTAAGCCTGGAGAAATCTCTCTGGCCCATGGCGGGGTGTTGTTTCTTGA
TGAATTACCGGAGTACAGCCGTAAGGTACTGGATGTGCTGCGTGAGCCATTGGAAAGTGGCCGTATTGTGATCAGTCGTG
CCAATCGCTCTATGACCTACCCGGCAAACTTCCAGCTGATTGCCGCTATGAACCCTTGTCCGTGTGGTTACTTTGGTGAC
CCGTCCGGGCGTTGCCAGTGTACCACCGATCAGATTCGCCGTTATCAGGGACAGGCATCCGGGCCATTATTAGACCGGAT
TGATTTGCATGTGGAAGTACCACCGATTCCAACGGCCATGTTACAGCAGGCGGCTCAGGGCGATTCAACCACCTCGGTTC
AACAACGGGTGATGCAGGCGCGGGAACGTCAGCTGGCGCGGCAGGGCTGTATCAATGCCGAATTAAGTGGTGATGTGCGT
GATCAGGTATGTGCGTTACAGGAAAGTGATCGGGAGTGGCTGCTATCTGCCATTGAAACGCTCAATTTATCAGCCCGTGC
CTATCACCGGGTGTTAAAGATTGCCCGCACGATTGCCGATTTGCAGGTCAAAGAAAGTATCGAACGGCCGCATTTATTAG
AGGCATTAAGTTATCGCACGATTGATCGCTATTTGCAGAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(7-118)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(128-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.509

100

0.537
  comM Glaesserella parasuis strain SC1401

52.402

100

0.529
  comM Haemophilus influenzae Rd KW20

51.754

100

0.52
  comM Vibrio campbellii strain DS40M4

50.877

100

0.511
  comM Legionella pneumophila str. Paris

48.182

96.916

0.467
  comM Legionella pneumophila strain ERS1305867

48.182

96.916

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.778

99.119

0.454

Multiple sequence alignment