Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOFKW_RS04110 Genome accession   NZ_OZ241356
Coordinates   921752..922279 (-) Length   175 a.a.
NCBI ID   WP_419816081.1    Uniprot ID   -
Organism   MAG: Glacieibacterium sp. isolate 0a93d3ae-4e29-414a-b5c3-115a92b3a03f     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 916752..927279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKW_RS04080 - 916888..917343 (+) 456 WP_419816075.1 peptidylprolyl isomerase -
  ACOFKW_RS04085 - 917371..917607 (+) 237 WP_419816076.1 DUF2171 domain-containing protein -
  ACOFKW_RS04090 - 917751..919892 (+) 2142 WP_419816077.1 sodium-translocating pyrophosphatase -
  ACOFKW_RS04095 - 920164..920643 (-) 480 WP_419816078.1 outer membrane protein assembly factor BamE -
  ACOFKW_RS04100 - 920736..921239 (+) 504 WP_419816079.1 ubiquinol-cytochrome C chaperone family protein -
  ACOFKW_RS04105 - 921236..921745 (+) 510 WP_419816080.1 YceD family protein -
  ACOFKW_RS04110 ssb 921752..922279 (-) 528 WP_419816081.1 single-stranded DNA-binding protein Machinery gene
  ACOFKW_RS04115 - 922424..923578 (+) 1155 WP_419816082.1 DUF3667 domain-containing protein -
  ACOFKW_RS04120 feoB 923567..925402 (-) 1836 WP_419816862.1 ferrous iron transporter B -
  ACOFKW_RS04125 - 925474..925758 (-) 285 WP_419816083.1 FeoA family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18340.04 Da        Isoelectric Point: 5.3552

>NTDB_id=1170808 ACOFKW_RS04110 WP_419816081.1 921752..922279(-) (ssb) [MAG: Glacieibacterium sp. isolate 0a93d3ae-4e29-414a-b5c3-115a92b3a03f]
MAGVNKVILVGRLGKDPETKEFGNGGRVVKFSLATSENWRDKNSGERKEKTEWHNIVIFNENIGKIASQYLKKGSEVYLE
GSLQTRKWQDQSGVEKYTTEVVLQNFNGNLTLLGGRDGGGEGGGSGGGGGEYGGRSGGGGGNRDFGGAPSGGGGAAKKPA
YGSDFSDDLDDDVPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1170808 ACOFKW_RS04110 WP_419816081.1 921752..922279(-) (ssb) [MAG: Glacieibacterium sp. isolate 0a93d3ae-4e29-414a-b5c3-115a92b3a03f]
ATGGCCGGTGTCAACAAAGTCATCCTCGTCGGACGCCTGGGCAAGGACCCGGAGACGAAGGAATTCGGCAACGGCGGCCG
TGTCGTCAAGTTCAGCCTGGCGACCTCCGAGAATTGGCGCGATAAGAACAGCGGCGAGCGCAAGGAGAAGACCGAGTGGC
ATAACATCGTGATCTTCAACGAGAATATCGGCAAGATCGCGAGCCAGTATCTGAAGAAGGGCAGCGAGGTCTATCTCGAA
GGCTCGCTCCAGACCCGCAAGTGGCAGGACCAGTCGGGTGTCGAGAAGTACACCACCGAGGTCGTGCTGCAGAACTTCAA
CGGCAATCTGACCCTGCTCGGCGGCCGTGACGGCGGCGGCGAGGGTGGCGGTAGCGGCGGCGGTGGCGGTGAGTACGGCG
GCCGCTCGGGTGGCGGTGGCGGTAACCGCGACTTCGGCGGAGCTCCGTCCGGTGGCGGCGGCGCGGCGAAGAAGCCGGCC
TATGGCAGCGACTTCTCCGACGACCTCGACGACGACGTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.277

100

0.497
  ssb Vibrio cholerae strain A1552

45.763

100

0.463
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.406
  ssb Neisseria meningitidis MC58

39.665

100

0.406
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.973

100

0.366

Multiple sequence alignment