Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | ACOCLE_RS25440 | Genome accession | NZ_OZ239981 |
| Coordinates | 5769497..5771203 (-) | Length | 568 a.a. |
| NCBI ID | WP_419534793.1 | Uniprot ID | - |
| Organism | MAG: Endozoicomonas sp. isolate 83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5764497..5776203
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCLE_RS25435 | putA | 5766245..5769436 (+) | 3192 | WP_419534792.1 | bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA | - |
| ACOCLE_RS25440 | pilB | 5769497..5771203 (-) | 1707 | WP_419534793.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACOCLE_RS25445 | - | 5772213..5772710 (+) | 498 | WP_419537265.1 | pilin | - |
| ACOCLE_RS25450 | - | 5773051..5773584 (+) | 534 | WP_419534794.1 | REP-associated tyrosine transposase | - |
| ACOCLE_RS25455 | - | 5773640..5774104 (-) | 465 | WP_419534795.1 | hypothetical protein | - |
| ACOCLE_RS25460 | - | 5774499..5774607 (+) | 109 | Protein_4986 | type IV pilin protein | - |
Sequence
Protein
Download Length: 568 a.a. Molecular weight: 62142.15 Da Isoelectric Point: 5.2307
>NTDB_id=1170751 ACOCLE_RS25440 WP_419534793.1 5769497..5771203(-) (pilB) [MAG: Endozoicomonas sp. isolate 83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c]
MANKPLTGLAARLLADQLMDEAAIHEAEAAAAKANKPLSRYLLEKKLVDAKALMLATAEEFGLPVIDLSAFDKEHFAKDL
VQEKLVRKHHALPLIKRGSHLFVAISDPSNHQGLDEIRFNTGLTIHSILAEPALLEKMMEASLDDTGQALADLGGDEFGE
LEDLEVSAVDDGPEDVQGGGEDDTPVVKFVNKMLLSAIKGGSSDLHFEPYEKAYRVRFRTDGILHEVTRPPVSLGPRIAS
RLKIMSAMDISERRKPQDGRIKMKLSKTKAIDFRVNTLPTLWGEKIVLRILDPSSAKMGIDALGYEEVQKSMYMTALHQP
QGMILVTGPTGSGKTVSLYTGLNILNTPERNISTAEDPVEINLEGINQVNVNPKQGMDFSQALRAFLRQDPDIIMVGEIR
DLETANIAIKAAQTGHMVLSTLHTNSAAETLTRLQNMGVPSFNIATSVSLIIAQRLARRLCSNCKTKIQVPKETLLEEGF
TEEQAATAEIYGPKGCDNCNNGYKGRVGIYEVVAITPGMQQIIMEEGNSLQISEQAEKEGFNNLRQSGLLKALQGVTSLE
EVNRVTQD
MANKPLTGLAARLLADQLMDEAAIHEAEAAAAKANKPLSRYLLEKKLVDAKALMLATAEEFGLPVIDLSAFDKEHFAKDL
VQEKLVRKHHALPLIKRGSHLFVAISDPSNHQGLDEIRFNTGLTIHSILAEPALLEKMMEASLDDTGQALADLGGDEFGE
LEDLEVSAVDDGPEDVQGGGEDDTPVVKFVNKMLLSAIKGGSSDLHFEPYEKAYRVRFRTDGILHEVTRPPVSLGPRIAS
RLKIMSAMDISERRKPQDGRIKMKLSKTKAIDFRVNTLPTLWGEKIVLRILDPSSAKMGIDALGYEEVQKSMYMTALHQP
QGMILVTGPTGSGKTVSLYTGLNILNTPERNISTAEDPVEINLEGINQVNVNPKQGMDFSQALRAFLRQDPDIIMVGEIR
DLETANIAIKAAQTGHMVLSTLHTNSAAETLTRLQNMGVPSFNIATSVSLIIAQRLARRLCSNCKTKIQVPKETLLEEGF
TEEQAATAEIYGPKGCDNCNNGYKGRVGIYEVVAITPGMQQIIMEEGNSLQISEQAEKEGFNNLRQSGLLKALQGVTSLE
EVNRVTQD
Nucleotide
Download Length: 1707 bp
>NTDB_id=1170751 ACOCLE_RS25440 WP_419534793.1 5769497..5771203(-) (pilB) [MAG: Endozoicomonas sp. isolate 83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c]
ATGGCAAATAAACCTCTGACCGGGCTGGCTGCCCGCCTGCTGGCCGACCAACTGATGGATGAAGCCGCCATTCATGAAGC
GGAGGCGGCTGCGGCCAAGGCCAATAAACCCCTTTCCCGATATCTTCTGGAAAAAAAACTGGTCGATGCAAAAGCCCTGA
TGCTGGCTACTGCCGAAGAGTTTGGTCTTCCGGTTATCGACCTGAGCGCCTTTGACAAAGAGCACTTTGCCAAAGACCTT
GTTCAGGAAAAGCTGGTCCGCAAACATCATGCTCTCCCGCTGATTAAACGGGGCTCCCATCTGTTTGTTGCCATTTCTGA
CCCTTCCAATCACCAGGGACTTGACGAGATTCGTTTCAACACAGGCCTCACGATCCATTCCATTCTGGCGGAACCTGCTC
TGCTGGAAAAGATGATGGAAGCCTCTCTGGACGATACGGGCCAGGCACTGGCGGACCTTGGGGGAGATGAGTTTGGTGAG
CTGGAAGATCTCGAAGTCAGTGCTGTTGATGATGGACCAGAAGATGTTCAGGGCGGCGGTGAAGATGACACGCCCGTCGT
AAAATTCGTTAACAAAATGCTCCTCTCTGCCATTAAAGGCGGATCATCAGACCTTCATTTTGAGCCTTATGAAAAAGCGT
ATCGTGTTCGATTTCGAACCGACGGCATACTCCATGAGGTTACCCGGCCACCAGTCTCATTAGGGCCAAGAATAGCATCC
CGTTTAAAAATCATGTCCGCCATGGATATATCTGAGCGCAGAAAGCCTCAGGATGGCCGGATTAAAATGAAACTGTCGAA
AACCAAAGCCATTGACTTCCGTGTGAACACGCTACCCACCTTGTGGGGTGAAAAAATCGTACTGCGTATTCTTGATCCTT
CCAGTGCCAAAATGGGGATTGATGCCCTGGGTTATGAAGAAGTCCAGAAGTCCATGTACATGACGGCACTTCATCAGCCA
CAGGGAATGATACTGGTCACAGGCCCAACCGGCTCGGGAAAAACGGTATCACTCTATACTGGCTTGAATATTCTCAATAC
GCCTGAAAGAAACATCTCCACGGCGGAAGACCCGGTAGAGATTAACCTGGAAGGGATTAACCAGGTCAACGTAAACCCCA
AACAGGGCATGGACTTCAGTCAAGCATTGAGAGCCTTCCTGCGTCAGGATCCAGACATCATTATGGTGGGTGAGATACGA
GACCTGGAAACAGCGAATATCGCCATAAAAGCCGCACAGACCGGTCACATGGTACTGTCCACCCTTCACACCAACAGCGC
GGCAGAAACCCTGACCCGTTTGCAGAACATGGGTGTCCCCTCATTTAACATTGCAACGTCGGTCAGCTTGATTATTGCCC
AGCGTCTGGCCAGACGTTTATGCAGCAATTGTAAAACGAAAATCCAGGTTCCAAAGGAAACGCTGCTTGAGGAAGGCTTT
ACTGAAGAGCAGGCAGCCACCGCTGAAATCTATGGACCGAAGGGATGTGATAACTGCAACAATGGCTACAAAGGCCGTGT
AGGGATTTATGAGGTCGTTGCCATCACGCCCGGGATGCAGCAGATCATTATGGAAGAAGGTAACTCCCTGCAAATTTCAG
AACAGGCCGAAAAAGAAGGTTTCAATAACCTTCGTCAATCCGGACTGCTCAAGGCCCTGCAAGGCGTTACCAGTCTCGAA
GAGGTCAATCGGGTCACACAGGATTGA
ATGGCAAATAAACCTCTGACCGGGCTGGCTGCCCGCCTGCTGGCCGACCAACTGATGGATGAAGCCGCCATTCATGAAGC
GGAGGCGGCTGCGGCCAAGGCCAATAAACCCCTTTCCCGATATCTTCTGGAAAAAAAACTGGTCGATGCAAAAGCCCTGA
TGCTGGCTACTGCCGAAGAGTTTGGTCTTCCGGTTATCGACCTGAGCGCCTTTGACAAAGAGCACTTTGCCAAAGACCTT
GTTCAGGAAAAGCTGGTCCGCAAACATCATGCTCTCCCGCTGATTAAACGGGGCTCCCATCTGTTTGTTGCCATTTCTGA
CCCTTCCAATCACCAGGGACTTGACGAGATTCGTTTCAACACAGGCCTCACGATCCATTCCATTCTGGCGGAACCTGCTC
TGCTGGAAAAGATGATGGAAGCCTCTCTGGACGATACGGGCCAGGCACTGGCGGACCTTGGGGGAGATGAGTTTGGTGAG
CTGGAAGATCTCGAAGTCAGTGCTGTTGATGATGGACCAGAAGATGTTCAGGGCGGCGGTGAAGATGACACGCCCGTCGT
AAAATTCGTTAACAAAATGCTCCTCTCTGCCATTAAAGGCGGATCATCAGACCTTCATTTTGAGCCTTATGAAAAAGCGT
ATCGTGTTCGATTTCGAACCGACGGCATACTCCATGAGGTTACCCGGCCACCAGTCTCATTAGGGCCAAGAATAGCATCC
CGTTTAAAAATCATGTCCGCCATGGATATATCTGAGCGCAGAAAGCCTCAGGATGGCCGGATTAAAATGAAACTGTCGAA
AACCAAAGCCATTGACTTCCGTGTGAACACGCTACCCACCTTGTGGGGTGAAAAAATCGTACTGCGTATTCTTGATCCTT
CCAGTGCCAAAATGGGGATTGATGCCCTGGGTTATGAAGAAGTCCAGAAGTCCATGTACATGACGGCACTTCATCAGCCA
CAGGGAATGATACTGGTCACAGGCCCAACCGGCTCGGGAAAAACGGTATCACTCTATACTGGCTTGAATATTCTCAATAC
GCCTGAAAGAAACATCTCCACGGCGGAAGACCCGGTAGAGATTAACCTGGAAGGGATTAACCAGGTCAACGTAAACCCCA
AACAGGGCATGGACTTCAGTCAAGCATTGAGAGCCTTCCTGCGTCAGGATCCAGACATCATTATGGTGGGTGAGATACGA
GACCTGGAAACAGCGAATATCGCCATAAAAGCCGCACAGACCGGTCACATGGTACTGTCCACCCTTCACACCAACAGCGC
GGCAGAAACCCTGACCCGTTTGCAGAACATGGGTGTCCCCTCATTTAACATTGCAACGTCGGTCAGCTTGATTATTGCCC
AGCGTCTGGCCAGACGTTTATGCAGCAATTGTAAAACGAAAATCCAGGTTCCAAAGGAAACGCTGCTTGAGGAAGGCTTT
ACTGAAGAGCAGGCAGCCACCGCTGAAATCTATGGACCGAAGGGATGTGATAACTGCAACAATGGCTACAAAGGCCGTGT
AGGGATTTATGAGGTCGTTGCCATCACGCCCGGGATGCAGCAGATCATTATGGAAGAAGGTAACTCCCTGCAAATTTCAG
AACAGGCCGAAAAAGAAGGTTTCAATAACCTTCGTCAATCCGGACTGCTCAAGGCCCTGCAAGGCGTTACCAGTCTCGAA
GAGGTCAATCGGGTCACACAGGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
60.245 |
100 |
0.606 |
| pilB | Acinetobacter baylyi ADP1 |
58.127 |
99.648 |
0.579 |
| pilB | Legionella pneumophila strain ERS1305867 |
54.211 |
100 |
0.544 |
| pilB | Vibrio cholerae strain A1552 |
50 |
99.296 |
0.496 |
| pilF | Neisseria gonorrhoeae MS11 |
46.935 |
100 |
0.472 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
51.859 |
89.965 |
0.467 |
| pilB | Vibrio campbellii strain DS40M4 |
51.468 |
89.965 |
0.463 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
38.959 |
98.063 |
0.382 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
39.504 |
92.254 |
0.364 |