Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACOCLE_RS24290 Genome accession   NZ_OZ239981
Coordinates   5475410..5476933 (+) Length   507 a.a.
NCBI ID   WP_419534600.1    Uniprot ID   -
Organism   MAG: Endozoicomonas sp. isolate 83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5470410..5481933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCLE_RS24275 - 5471078..5471467 (+) 390 WP_419534598.1 hypothetical protein -
  ACOCLE_RS24280 - 5471536..5472816 (+) 1281 WP_419532972.1 ISKra4 family transposase -
  ACOCLE_RS24285 - 5472912..5475200 (+) 2289 WP_419534599.1 hypothetical protein -
  ACOCLE_RS24290 comM 5475410..5476933 (+) 1524 WP_419534600.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACOCLE_RS24295 - 5476927..5478219 (-) 1293 WP_419534601.1 cytochrome P450 -
  ACOCLE_RS24300 - 5478490..5479308 (+) 819 WP_419534602.1 SDR family NAD(P)-dependent oxidoreductase -
  ACOCLE_RS24305 - 5479303..5480583 (-) 1281 WP_419532972.1 ISKra4 family transposase -
  ACOCLE_RS24310 - 5480582..5480767 (+) 186 WP_419534603.1 hypothetical protein -
  ACOCLE_RS24315 - 5480984..5481766 (-) 783 WP_419534604.1 hypothetical protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55082.24 Da        Isoelectric Point: 7.8627

>NTDB_id=1170749 ACOCLE_RS24290 WP_419534600.1 5475410..5476933(+) (comM) [MAG: Endozoicomonas sp. isolate 83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c]
MPSTLAQVYTRANQGIRAPAVSVEVHLSQGLPALHIVGLPEAAVRESKDRVRSALINSGYDFPDGRITVNLAPADLPKEG
GRFDLPIALGILVASGQLPGEVLENKEFLGELALSGHLRPVRAVLPASLACKETNRALVLPEQNASVAAMVSSVTIIGTR
SLTEVCAYLREKIHIEPAKPDQNGCKTHYPDLSEVRGQEQAKRALLIAASGSHHLLLFGPPGTGKTMLASRLPGLLPPLT
ESEALDIAAIHSLTSSAMDTVWQRPFRTPHHSSSSVSLVGGGSIPQPGEISFAHHGVLFLDEMPEFARTALEMLREPLEN
GEVVITRAKGQECFPARFQLVGAMNPCPCGYLGDSQRTCRCTPDQVRRYRNKLSGPLLDRIDLQIEVPSQTIQTIMEPAI
QNNDSPETDSAKLRDLVIKARKRQLARQGKINCQLSSRELFEVCALGEKEKGLIARASEHLQVSTRGLHRILRVARTIAD
LAGSPEVLSPHLGEAMQYRQLDRQSVQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1170749 ACOCLE_RS24290 WP_419534600.1 5475410..5476933(+) (comM) [MAG: Endozoicomonas sp. isolate 83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c]
ATGCCTTCAACACTGGCGCAAGTCTACACTCGGGCAAATCAGGGCATCCGTGCCCCCGCGGTTTCTGTGGAAGTACACCT
TTCTCAAGGTCTTCCAGCACTGCATATTGTTGGCTTACCTGAAGCCGCTGTAAGGGAAAGCAAGGATCGTGTGCGAAGTG
CCTTGATCAACAGTGGCTATGACTTCCCTGATGGCCGAATTACCGTCAACCTGGCGCCAGCAGACCTTCCGAAAGAAGGC
GGTCGCTTTGATCTGCCCATTGCGCTGGGCATTCTTGTAGCGTCAGGACAGCTGCCAGGTGAGGTTCTGGAGAATAAAGA
GTTCCTTGGGGAACTGGCGCTTTCCGGCCACCTTCGTCCCGTCCGAGCGGTTCTTCCTGCGTCATTAGCCTGCAAAGAAA
CTAACCGGGCATTGGTCCTACCTGAACAGAATGCGTCTGTTGCCGCCATGGTCAGCAGTGTCACGATTATTGGAACCCGA
AGTCTCACCGAAGTTTGCGCGTACCTACGAGAGAAAATCCATATTGAGCCCGCAAAACCAGATCAAAACGGTTGTAAAAC
ACATTACCCAGATCTGTCGGAGGTTCGAGGGCAGGAGCAAGCAAAGCGAGCGTTGTTGATTGCAGCTTCTGGCTCTCACC
ACCTGCTGCTTTTTGGTCCACCCGGTACCGGAAAAACCATGCTGGCCAGCCGCCTTCCCGGGCTGCTTCCACCACTGACA
GAATCCGAAGCACTTGATATTGCCGCTATACACTCACTGACATCCAGCGCCATGGACACCGTCTGGCAGCGCCCTTTTCG
CACACCTCATCACTCATCTTCATCCGTTTCTCTGGTGGGCGGTGGCAGCATACCCCAACCAGGCGAAATCTCTTTTGCGC
ACCATGGCGTGTTATTTCTGGATGAAATGCCTGAATTTGCCCGCACGGCTCTGGAAATGCTCAGAGAGCCTCTGGAAAAT
GGTGAGGTGGTCATCACCCGGGCCAAAGGTCAGGAGTGTTTTCCTGCCCGATTCCAGCTGGTAGGCGCAATGAACCCATG
CCCCTGCGGTTACCTGGGAGACAGTCAGCGAACCTGTCGATGTACTCCTGATCAGGTCAGACGCTACCGAAACAAACTAT
CCGGGCCACTGCTGGATCGTATTGACCTTCAGATTGAGGTGCCATCCCAGACAATTCAAACCATTATGGAACCAGCTATT
CAGAACAACGACTCACCAGAAACCGATTCAGCAAAGCTGAGAGACCTTGTGATCAAAGCCCGAAAAAGACAGTTGGCAAG
ACAGGGGAAAATCAATTGCCAGCTGTCATCCAGAGAGCTGTTTGAAGTCTGCGCACTGGGTGAAAAGGAAAAAGGGCTGA
TCGCCAGAGCATCTGAGCACCTGCAAGTCTCAACCCGCGGGCTGCATCGGATTTTGCGAGTTGCCAGAACCATTGCCGAC
CTTGCAGGCAGCCCTGAGGTGCTAAGCCCACACCTTGGAGAAGCCATGCAATATCGGCAACTGGATCGCCAGTCCGTTCA
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(23-144)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-499)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.175

99.408

0.529
  comM Vibrio campbellii strain DS40M4

53.386

99.014

0.529
  comM Haemophilus influenzae Rd KW20

51.378

100

0.515
  comM Glaesserella parasuis strain SC1401

50.591

100

0.507
  comM Legionella pneumophila str. Paris

50.4

98.619

0.497
  comM Legionella pneumophila strain ERS1305867

50.4

98.619

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.631

100

0.464

Multiple sequence alignment