Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACNALX_RS16110 Genome accession   NZ_OZ223214
Coordinates   60813..62342 (+) Length   509 a.a.
NCBI ID   WP_273858021.1    Uniprot ID   -
Organism   MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 55813..67342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNALX_RS16095 ilvE 57556..58491 (-) 936 WP_047887484.1 branched-chain-amino-acid transaminase -
  ACNALX_RS16100 ilvM 58512..58760 (-) 249 WP_047887483.1 acetolactate synthase 2 small subunit -
  ACNALX_RS16105 ilvG 58760..60406 (-) 1647 WP_415721115.1 acetolactate synthase 2 catalytic subunit -
  ACNALX_RS16110 comM 60813..62342 (+) 1530 WP_273858021.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACNALX_RS16115 - 62424..63026 (-) 603 WP_047887480.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACNALX_RS16120 - 63098..64087 (-) 990 WP_047887479.1 serine/threonine protein kinase -
  ACNALX_RS16125 ccoG 64196..65617 (-) 1422 WP_047887478.1 cytochrome c oxidase accessory protein CcoG -
  ACNALX_RS16130 - 65895..66161 (-) 267 WP_047887477.1 YihD family protein -
  ACNALX_RS16135 - 66295..66468 (-) 174 WP_273858015.1 hypothetical protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54288.53 Da        Isoelectric Point: 8.1304

>NTDB_id=1170649 ACNALX_RS16110 WP_273858021.1 60813..62342(+) (comM) [MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5]
MNLAIVHSRACVGVEAPPVTVEVHISNGMPALALVGLPETSVKEAKDRVRSAIVNAGFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPDTSLQNTEFLGELALSGELRPVKGALPAALAAKQAGRCLVVPDQNGNQVALVGKALHKSAPSL
LAVCGHLCGQASLSLSCSAPHEDPPPSGVSRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPDM
TVAEAMETAAVASLTQQSIHEGNWRRRPFRTPHHSSSMAALVGGGSVPRPGEISLAHNGILFLDEMPEFERKVLDSLREP
LESGEIVISRATSKMTFPARFQLIGALNPSPTGYYEGSQARTNPQAILRYLGRLSGPLLDRFDMSIEIPALPRGTLADGG
DRGEPSVVIRQRVAQARDIMQGRAGRVNALLSTRELDKYCALDKPDAEFLETALHQLGLSIRAYHRIIKVARTIADLAGC
ERISRAHLAEALGYRAMDRLLKQLSAQMV

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1170649 ACNALX_RS16110 WP_273858021.1 60813..62342(+) (comM) [MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5]
ATGAACCTTGCTATTGTCCATAGTCGAGCGTGTGTGGGAGTGGAAGCGCCGCCGGTGACGGTGGAAGTCCATATCAGTAA
CGGAATGCCGGCACTGGCACTGGTGGGGTTGCCGGAAACCAGTGTGAAAGAGGCCAAGGATCGGGTCCGCAGTGCGATTG
TCAACGCCGGGTTTGAGTTCCCGTCCCGGCGGATCACGGTCAATCTGGCTCCGGCGGATTTACCTAAGGAAGGCGGACGG
TTTGACCTGCCGATTGCGTTGGGGATACTCGCCGCTTCCGGTCAAATCCCTGATACATCACTGCAAAATACCGAGTTTTT
GGGGGAGTTAGCCCTGTCGGGGGAACTGCGTCCGGTCAAGGGAGCGTTGCCTGCGGCGCTCGCGGCCAAGCAGGCCGGAC
GGTGCCTGGTCGTCCCGGATCAGAACGGCAATCAGGTGGCGCTGGTGGGGAAGGCTCTCCACAAATCGGCCCCGTCCTTG
CTGGCGGTATGTGGCCATTTGTGCGGACAGGCTAGCCTCTCGCTCAGCTGTTCGGCCCCGCATGAAGACCCTCCACCGAG
TGGCGTGTCCCGCGACATGCAGGACATCATTGGTCAGCAGCAAGGGAAACGGGCGCTGGAAATTGCCGCGGCCGGCGGGC
ACAACCTGTTATTTTTGGGGCCGCCCGGAACCGGAAAAACCATGCTTGCGTCACGATTGTGCGATCTGCTGCCCGACATG
ACGGTCGCGGAAGCCATGGAAACCGCGGCCGTGGCGTCGCTGACTCAACAGAGCATTCACGAAGGCAACTGGCGGCGTCG
GCCTTTCAGAACGCCGCACCATTCCAGCTCGATGGCGGCGCTGGTGGGCGGGGGCTCGGTGCCCCGGCCGGGGGAAATCT
CCCTGGCGCATAACGGGATCCTGTTTTTGGATGAAATGCCGGAATTTGAACGTAAAGTGCTGGATTCTTTACGTGAACCG
CTGGAATCCGGCGAGATTGTGATCTCCCGAGCCACCAGCAAAATGACGTTTCCGGCTCGCTTTCAGCTGATTGGGGCATT
AAATCCCAGCCCGACCGGCTACTACGAAGGCAGTCAGGCACGCACCAACCCGCAGGCGATCTTGCGCTATCTGGGGCGGC
TGTCTGGCCCGTTGCTGGATCGTTTCGATATGTCGATTGAGATCCCGGCCCTGCCGCGCGGCACACTGGCGGATGGGGGC
GATCGGGGGGAGCCGAGTGTGGTGATCCGCCAACGGGTGGCGCAGGCGCGGGATATCATGCAAGGGCGTGCCGGACGGGT
GAATGCCCTGCTTTCGACTCGGGAGCTGGACAAGTATTGCGCGCTGGATAAGCCGGATGCGGAGTTTCTGGAAACCGCCT
TGCACCAGCTTGGTTTATCGATTCGGGCCTATCACCGTATTATCAAGGTGGCGCGCACCATTGCCGATTTAGCCGGGTGT
GAGCGGATCAGCCGAGCTCATCTGGCGGAAGCGCTCGGTTACCGGGCGATGGATCGGTTATTGAAACAGTTGTCAGCACA
AATGGTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

77.407

100

0.774
  comM Vibrio campbellii strain DS40M4

76.817

100

0.768
  comM Glaesserella parasuis strain SC1401

63.405

100

0.637
  comM Haemophilus influenzae Rd KW20

62.525

99.607

0.623
  comM Legionella pneumophila str. Paris

49.598

97.839

0.485
  comM Legionella pneumophila strain ERS1305867

49.598

97.839

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

99.411

0.436

Multiple sequence alignment