Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMFWW_RS01290 Genome accession   NZ_OZ221290
Coordinates   290945..292483 (-) Length   512 a.a.
NCBI ID   WP_413212951.1    Uniprot ID   -
Organism   Paraburkholderia kururiensis isolate ABIP2054     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 285945..297483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMFWW_RS01275 (PK2054_A0281) - 287790..289145 (+) 1356 WP_026120998.1 sigma-54-dependent transcriptional regulator -
  ACMFWW_RS01280 (PK2054_A0282) - 289263..289787 (-) 525 WP_026120999.1 TlpA disulfide reductase family protein -
  ACMFWW_RS01285 (PK2054_A0283) - 290025..290603 (+) 579 WP_413212950.1 hypothetical protein -
  ACMFWW_RS01290 (PK2054_A0284) comM 290945..292483 (-) 1539 WP_413212951.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMFWW_RS01295 (PK2054_A0285) - 292590..292844 (-) 255 WP_017772582.1 accessory factor UbiK family protein -
  ACMFWW_RS01300 (PK2054_A0287) - 293254..293592 (+) 339 WP_006048089.1 P-II family nitrogen regulator -
  ACMFWW_RS01305 (PK2054_A0288) - 293619..295127 (+) 1509 WP_126877699.1 ammonium transporter -
  ACMFWW_RS01310 (PK2054_A0289) gshA 295401..296690 (+) 1290 WP_017772583.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53736.52 Da        Isoelectric Point: 7.3624

>NTDB_id=1170522 ACMFWW_RS01290 WP_413212951.1 290945..292483(-) (comM) [Paraburkholderia kururiensis isolate ABIP2054]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSMVGLPDLEVRESRERVRAALQNCGFDFPVRRITVNLAPADLPKESGR
FDLPVALGILAASGQIPGESLAGREFAGELSLTGALRPMRGAFPMACGTARGSANAEGQTPELYLPAANAAEAALVPGVA
VFGAADLPSLCAHLAGAADARLSPVDTPTLPDTPCRAVPDMADVIGQRGARRALEVAAAGGHHMLMIGPPGAGKSMLAAR
LPGLLPPMTDEEALSSAALMSSSMVGFSPQQWRQRPFRAPHHSSSAAALVGGRNPPQPGEITLAHLGVLFLDELPEFDRH
VLETLREPLEAGRITISRAALQADFPAACQLVAAMNPCPCGWRGDPGGRCRCTPDGAARYMRKLSGPLLDRIDIQIEIPA
LSAAELAGRAAAPGEPSGAIAVRVRAARERQLARQGKTNRELAGREVDEVCETDADGEALLREAGERFGWSARAYYRVLK
VARTIGDLAGANRLTAAHVAEAIQYRRTALSV

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=1170522 ACMFWW_RS01290 WP_413212951.1 290945..292483(-) (comM) [Paraburkholderia kururiensis isolate ABIP2054]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCGGCTGCTGGCCGTGCGCCCGAAGTCACGGTCGAGGTTCACCTCGCCAA
CGGATTACCCTCGTTCTCCATGGTCGGCCTGCCCGACCTCGAAGTCCGCGAAAGCCGCGAGCGCGTTCGCGCCGCGCTTC
AGAACTGCGGTTTCGACTTTCCGGTCCGCCGGATCACCGTCAACCTGGCTCCCGCCGACCTGCCCAAGGAATCGGGGCGC
TTCGACTTGCCCGTCGCGCTCGGCATTCTGGCTGCAAGCGGCCAGATTCCTGGGGAATCGCTGGCCGGGCGCGAATTCGC
CGGGGAACTCTCGCTTACCGGCGCGCTGAGGCCCATGCGCGGCGCGTTCCCGATGGCATGTGGCACCGCGCGCGGCAGCG
CCAATGCCGAGGGCCAGACGCCCGAACTCTACCTGCCTGCGGCAAACGCGGCCGAAGCCGCCCTCGTACCGGGCGTCGCA
GTATTCGGAGCCGCGGACCTGCCGTCGCTCTGCGCACACCTGGCTGGAGCGGCCGACGCCCGCCTTTCCCCCGTCGATAC
GCCGACGCTGCCCGATACGCCTTGCCGCGCCGTACCCGACATGGCCGACGTGATCGGCCAGCGGGGCGCGCGACGCGCGC
TCGAAGTGGCCGCTGCGGGCGGCCACCATATGTTGATGATCGGGCCGCCGGGGGCCGGCAAATCGATGCTGGCCGCACGC
TTGCCGGGACTCCTGCCGCCCATGACGGACGAAGAAGCGCTCAGTTCGGCCGCCCTCATGTCGTCGAGCATGGTCGGCTT
CTCGCCGCAGCAATGGCGGCAGCGCCCGTTTCGCGCACCACATCACTCGTCGAGCGCGGCAGCGCTCGTGGGAGGACGCA
ATCCACCGCAGCCCGGCGAAATTACGCTCGCGCACCTCGGCGTGCTCTTCCTCGATGAACTGCCCGAATTCGATCGTCAC
GTGCTGGAGACACTGCGCGAGCCGCTCGAAGCCGGCCGCATCACGATCTCGCGCGCCGCGCTGCAGGCAGATTTCCCCGC
CGCCTGTCAGCTCGTGGCGGCCATGAATCCTTGCCCCTGCGGCTGGCGCGGCGATCCGGGCGGCCGGTGCCGCTGCACGC
CGGACGGCGCCGCGCGCTACATGCGCAAGCTCTCGGGGCCGCTTCTGGACCGCATCGACATCCAGATCGAGATTCCCGCC
CTCAGCGCGGCCGAACTTGCTGGCCGCGCCGCCGCGCCAGGCGAGCCGAGCGGCGCGATTGCCGTGCGCGTCCGCGCTGC
ACGCGAGCGCCAGTTGGCTCGACAGGGGAAGACCAATCGCGAACTGGCGGGGCGGGAGGTAGACGAGGTGTGCGAAACGG
ACGCGGACGGCGAAGCGCTGTTGCGGGAAGCGGGCGAGCGCTTTGGCTGGTCGGCGCGGGCGTACTACCGCGTGTTGAAG
GTCGCGCGCACGATTGGCGATCTGGCCGGTGCCAATCGGCTTACTGCCGCGCACGTCGCCGAAGCCATCCAGTACCGGCG
CACCGCGCTATCCGTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.888

99.023

0.504
  comM Vibrio campbellii strain DS40M4

49.605

98.828

0.49
  comM Legionella pneumophila str. Paris

48.337

99.805

0.482
  comM Legionella pneumophila strain ERS1305867

48.337

99.805

0.482
  comM Haemophilus influenzae Rd KW20

47.647

99.609

0.475
  comM Glaesserella parasuis strain SC1401

47.14

99.023

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.863

97.07

0.426

Multiple sequence alignment