Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AW03_RS12080 Genome accession   NZ_CP007173
Coordinates   2360626..2361057 (-) Length   143 a.a.
NCBI ID   WP_015384089.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2355626..2366057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS12030 (AW03_023180) sinI 2355819..2355992 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  AW03_RS12035 (AW03_023190) sinR 2356026..2356382 (+) 357 WP_080341612.1 transcriptional regulator SinR Regulator
  AW03_RS12040 (AW03_023200) tasA 2356455..2357240 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  AW03_RS12045 (AW03_023210) sipW 2357304..2357876 (-) 573 WP_080030740.1 signal peptidase I SipW -
  AW03_RS12050 (AW03_023220) tapA 2357860..2358621 (-) 762 WP_015384085.1 amyloid fiber anchoring/assembly protein TapA -
  AW03_RS12055 (AW03_023230) yqzG 2358891..2359217 (+) 327 WP_015384086.1 YqzG/YhdC family protein -
  AW03_RS12060 (AW03_023240) spoIITA 2359259..2359438 (-) 180 WP_003230176.1 YqzE family protein -
  AW03_RS12065 (AW03_023250) comGG 2359511..2359885 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  AW03_RS12070 comGF 2359886..2360269 (-) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  AW03_RS12075 (AW03_023270) comGE 2360295..2360642 (-) 348 WP_015384088.1 ComG operon protein 5 Machinery gene
  AW03_RS12080 (AW03_023280) comGD 2360626..2361057 (-) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  AW03_RS12085 (AW03_023290) comGC 2361047..2361343 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  AW03_RS12090 (AW03_023300) comGB 2361357..2362394 (-) 1038 WP_015483430.1 comG operon protein ComGB Machinery gene
  AW03_RS12095 (AW03_023310) comGA 2362381..2363451 (-) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  AW03_RS12105 (AW03_023320) corA 2363861..2364814 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16064.60 Da        Isoelectric Point: 9.6754

>NTDB_id=117051 AW03_RS12080 WP_015384089.1 2360626..2361057(-) (comGD) [Bacillus subtilis HJ5]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=117051 AW03_RS12080 WP_015384089.1 2360626..2361057(-) (comGD) [Bacillus subtilis HJ5]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTATCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

97.902

100

0.979

Multiple sequence alignment