Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AW03_RS12035 | Genome accession | NZ_CP007173 |
| Coordinates | 2356026..2356382 (+) | Length | 118 a.a. |
| NCBI ID | WP_080341612.1 | Uniprot ID | - |
| Organism | Bacillus subtilis HJ5 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2351026..2361382
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AW03_RS12015 (AW03_023150) | gcvT | 2351618..2352706 (-) | 1089 | WP_015384081.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AW03_RS12020 (AW03_023160) | hepAA | 2353148..2354821 (+) | 1674 | WP_015384082.1 | SNF2-related protein | - |
| AW03_RS12025 (AW03_023170) | yqhG | 2354842..2355636 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| AW03_RS12030 (AW03_023180) | sinI | 2355819..2355992 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| AW03_RS12035 (AW03_023190) | sinR | 2356026..2356382 (+) | 357 | WP_080341612.1 | transcriptional regulator SinR | Regulator |
| AW03_RS12040 (AW03_023200) | tasA | 2356455..2357240 (-) | 786 | WP_003230183.1 | biofilm matrix protein TasA | - |
| AW03_RS12045 (AW03_023210) | sipW | 2357304..2357876 (-) | 573 | WP_080030740.1 | signal peptidase I SipW | - |
| AW03_RS12050 (AW03_023220) | tapA | 2357860..2358621 (-) | 762 | WP_015384085.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AW03_RS12055 (AW03_023230) | yqzG | 2358891..2359217 (+) | 327 | WP_015384086.1 | YqzG/YhdC family protein | - |
| AW03_RS12060 (AW03_023240) | spoIITA | 2359259..2359438 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| AW03_RS12065 (AW03_023250) | comGG | 2359511..2359885 (-) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| AW03_RS12070 | comGF | 2359886..2360269 (-) | 384 | WP_015384087.1 | ComG operon protein ComGF | Machinery gene |
| AW03_RS12075 (AW03_023270) | comGE | 2360295..2360642 (-) | 348 | WP_015384088.1 | ComG operon protein 5 | Machinery gene |
| AW03_RS12080 (AW03_023280) | comGD | 2360626..2361057 (-) | 432 | WP_015384089.1 | comG operon protein ComGD | Machinery gene |
| AW03_RS12085 (AW03_023290) | comGC | 2361047..2361343 (-) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 118 a.a. Molecular weight: 13789.61 Da Isoelectric Point: 9.6071
>NTDB_id=117047 AW03_RS12035 WP_080341612.1 2356026..2356382(+) (sinR) [Bacillus subtilis HJ5]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKRGVVPEQRH
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKRGVVPEQRH
Nucleotide
Download Length: 357 bp
>NTDB_id=117047 AW03_RS12035 WP_080341612.1 2356026..2356382(+) (sinR) [Bacillus subtilis HJ5]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAAGAGGAGTAGTGCCTGAGCAGAGGCACTAA
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAAGAGGAGTAGTGCCTGAGCAGAGGCACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
92.373 |
0.924 |