Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACH3IY_RS01990 Genome accession   NZ_OZ220194
Coordinates   103552..105060 (+) Length   502 a.a.
NCBI ID   WP_395166793.1    Uniprot ID   -
Organism   MAG: Francisella salimarina isolate cc853e76-0fc4-44c8-9d05-1aac9db74c27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 98552..110060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH3IY_RS01975 - 100224..101813 (+) 1590 WP_395166791.1 complex I subunit 4 family protein -
  ACH3IY_RS01980 - 101829..103280 (+) 1452 WP_004286964.1 NADH-quinone oxidoreductase subunit N -
  ACH3IY_RS01985 - 103356..103550 (+) 195 WP_395166792.1 accessory factor UbiK family protein -
  ACH3IY_RS01990 comM 103552..105060 (+) 1509 WP_395166793.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACH3IY_RS01995 hemE 105095..106129 (+) 1035 WP_395166794.1 uroporphyrinogen decarboxylase -
  ACH3IY_RS02005 rimP 106345..106797 (+) 453 WP_013922318.1 ribosome maturation factor RimP -
  ACH3IY_RS02010 nusA 106813..108282 (+) 1470 WP_395166795.1 transcription termination factor NusA -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55088.71 Da        Isoelectric Point: 7.6049

>NTDB_id=1170495 ACH3IY_RS01990 WP_395166793.1 103552..105060(+) (comM) [MAG: Francisella salimarina isolate cc853e76-0fc4-44c8-9d05-1aac9db74c27]
MSLAILKSRAQLGIEAPLVSIEVHLSNGLPGLSIVGLPEAAVKESKDRVRSAIINSGFNFPNKRITINLAPADLPKSSGR
FDLPIALGILYASGQINIVRNVEDFEFAGELSLGGELRKISSAIPMAIKCVANNKKLVIPIHNEKEIALVEDVCAYSFET
LKEIVGFLSGDDKASVEQLQDIDFERLYSDLEDVKGQYQARRALEIAAAGGHNILLVGPPGTGKTMLASRLNSILPPLDK
KEALSSAMIASIKGESGIAESFYKRPFRHPHHTSSGVSLVGGGSNPMPGEISLAHNGVLFLDELPEFDRKVLEVLREPLE
TGVVNISRAKCQVEYPANFQLIAAMNPCPCGYLGSQYKECSDSIQSIRRYQSKLSGPLLDRIDLQVEVLELAKEDLTNQE
LRGEKSSIIRERVKKARDIQITRQGKINSMLTSKELDEVCDLDEESKKMLTLAIEKLGLSARGYYKILKVARTIADLSGC
KKIEKLAIQEAIGYRKMDKFFK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=1170495 ACH3IY_RS01990 WP_395166793.1 103552..105060(+) (comM) [MAG: Francisella salimarina isolate cc853e76-0fc4-44c8-9d05-1aac9db74c27]
ATGTCTTTAGCAATTCTAAAAAGTCGAGCTCAATTGGGTATTGAAGCACCGCTTGTCTCGATAGAAGTTCATTTGTCAAA
TGGTCTGCCTGGCTTATCAATAGTAGGCTTACCAGAGGCAGCTGTCAAAGAGAGCAAAGATCGTGTTAGAAGTGCTATCA
TAAACTCGGGATTTAATTTTCCAAATAAACGTATCACAATTAATCTTGCCCCTGCAGACTTACCTAAGAGTAGTGGAAGA
TTTGATTTGCCTATAGCATTAGGTATTTTATATGCATCAGGCCAAATAAATATTGTTAGAAATGTTGAAGATTTCGAGTT
TGCTGGAGAGTTGTCTCTAGGTGGTGAGCTTAGGAAAATTTCTAGTGCGATACCGATGGCTATTAAGTGTGTTGCGAATA
ACAAAAAACTTGTGATACCTATTCATAATGAAAAAGAGATTGCTTTAGTTGAAGATGTTTGTGCTTATTCTTTTGAGACT
CTAAAAGAAATCGTAGGTTTTTTATCTGGTGACGATAAAGCTTCGGTAGAACAATTACAAGATATTGACTTTGAGAGATT
GTATTCTGATTTAGAAGATGTCAAAGGACAATATCAGGCTAGACGCGCTTTGGAAATTGCAGCAGCAGGTGGTCATAATA
TTCTTTTAGTTGGTCCACCGGGAACTGGTAAGACTATGCTTGCTAGTAGGCTTAATTCTATTTTGCCACCATTAGACAAG
AAAGAAGCCCTTTCATCAGCGATGATTGCTTCAATTAAAGGTGAATCAGGGATAGCAGAAAGTTTTTATAAAAGACCATT
TCGTCATCCTCATCATACTTCTTCAGGTGTTTCTTTGGTTGGAGGTGGTAGCAACCCTATGCCAGGTGAAATATCTTTAG
CTCATAATGGCGTGTTATTCCTTGATGAGTTGCCAGAGTTTGACCGTAAGGTTCTAGAGGTTTTAAGAGAACCTCTTGAG
ACGGGAGTTGTAAATATTTCTAGAGCAAAGTGTCAGGTAGAGTATCCAGCGAACTTCCAATTGATAGCTGCTATGAATCC
TTGTCCGTGTGGGTATTTAGGATCGCAGTATAAAGAGTGCTCAGATTCAATTCAATCAATTAGAAGATATCAAAGTAAGC
TTTCGGGACCTCTTTTGGATAGAATTGATTTGCAGGTTGAGGTTCTTGAGCTAGCAAAAGAGGATCTAACAAATCAAGAG
TTAAGAGGCGAAAAAAGTAGTATAATTAGGGAGCGAGTTAAAAAGGCGAGAGATATCCAGATTACTAGGCAAGGTAAAAT
AAATTCAATGCTAACAAGTAAAGAGCTAGACGAGGTTTGTGACCTTGATGAAGAAAGTAAAAAAATGCTAACACTAGCTA
TAGAAAAGCTTGGACTATCAGCCAGAGGGTACTATAAAATACTCAAAGTTGCTCGAACAATAGCAGATTTAAGCGGATGC
AAGAAAATTGAAAAACTAGCAATTCAAGAAGCTATAGGTTACAGAAAAATGGACAAGTTTTTTAAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.559

100

0.532
  comM Glaesserella parasuis strain SC1401

52.071

100

0.526
  comM Vibrio campbellii strain DS40M4

52.183

100

0.524
  comM Haemophilus influenzae Rd KW20

50.888

100

0.514
  comM Legionella pneumophila str. Paris

51.205

99.203

0.508
  comM Legionella pneumophila strain ERS1305867

51.205

99.203

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49.004

100

0.49

Multiple sequence alignment