Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACLV7W_RS04050 Genome accession   NZ_OZ217346
Coordinates   827153..828106 (+) Length   317 a.a.
NCBI ID   WP_411865481.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 822153..833106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS04050 (SMID22_08280) coiA 827153..828106 (+) 954 WP_411865481.1 competence protein CoiA Machinery gene
  ACLV7W_RS04055 (SMID22_08290) pepF 828125..829927 (+) 1803 WP_411865482.1 oligoendopeptidase F Regulator
  ACLV7W_RS04060 (SMID22_08300) - 829929..830642 (+) 714 WP_261105932.1 O-methyltransferase -
  ACLV7W_RS04065 (SMID22_08310) prsA 830709..831647 (+) 939 WP_000727954.1 peptidylprolyl isomerase PrsA -
  ACLV7W_RS04070 (SMID22_08320) ftsW 831808..833031 (+) 1224 WP_033684998.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38119.73 Da        Isoelectric Point: 9.1328

>NTDB_id=1170441 ACLV7W_RS04050 WP_411865481.1 827153..828106(+) (coiA) [Streptococcus mitis isolate S. mitis D22]
MFVARDARGQLVNVLEDRLEKQAYTCPACGGQLRLRQGPSVRTHFAHKSLKDCGFSFENESPEHLANKESLYQWLKKEAE
VQLEYPLPELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSHNMGF
YVWELDKEKQLLRLKYLIHQDLRGKLHYQIKEFPYGQASLLEILRFPYKKQKISHFTVSQDKGICRYIRQQLYYQHPFWM
KEQAEAYQKGENLLTYGLKEWYPQIRPLVGKFFQIEQDLTSYYQHFYTYYQENPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1170441 ACLV7W_RS04050 WP_411865481.1 827153..828106(+) (coiA) [Streptococcus mitis isolate S. mitis D22]
ATGTTTGTTGCGAGAGATGCTAGGGGACAGTTGGTAAATGTGTTAGAGGATAGGCTCGAGAAACAAGCATATACCTGCCC
CGCTTGTGGAGGTCAGCTCCGTTTGCGTCAAGGACCAAGTGTACGGACCCATTTTGCCCATAAATCTTTAAAAGACTGTG
GTTTTTCATTTGAAAATGAAAGTCCAGAACACTTGGCCAATAAGGAATCTCTCTATCAGTGGTTGAAAAAAGAGGCAGAG
GTGCAATTAGAATACCCGCTTCCAGAGCTTAAACAGATTGCAGATGTATTTGTAAATGGCAATCTAGCTCTAGAGGTTCA
GTGTAGCCCCTTGCCTCAAAAAGTTCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTATCAAGTACTGTGGTTGC
TGGGTCAAAAACTTTGGCTCAAGGAGCGTTTAACTCGTCTGCAACAAGGTTTTCTCTATTTTAGTCACAACATGGGCTTT
TATGTTTGGGAATTAGATAAGGAAAAACAGCTTTTAAGGCTCAAATACCTGATTCACCAAGACCTCCGTGGTAAACTCCA
TTATCAAATCAAGGAATTTCCCTATGGTCAAGCTAGTTTATTGGAAATATTGCGTTTTCCTTATAAGAAACAAAAAATAT
CTCATTTTACAGTTTCTCAGGACAAGGGCATTTGTCGCTATATCCGGCAACAGCTGTACTATCAACATCCCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATCTCCTGACTTATGGGCTAAAAGAATGGTATCCACAAATTCGGCC
ACTAGTAGGCAAATTTTTCCAGATTGAGCAAGATTTGACCAGCTATTATCAGCACTTTTACACCTATTACCAAGAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(8-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

92.744

100

0.927
  coiA Streptococcus pneumoniae Rx1

92.744

100

0.927
  coiA Streptococcus pneumoniae D39

92.744

100

0.927
  coiA Streptococcus pneumoniae R6

92.744

100

0.927
  coiA Streptococcus mitis NCTC 12261

90.852

100

0.909
  coiA Lactococcus lactis subsp. cremoris KW2

44.41

100

0.451

Multiple sequence alignment