Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACLV7W_RS04055 Genome accession   NZ_OZ217346
Coordinates   828125..829927 (+) Length   600 a.a.
NCBI ID   WP_411865482.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 823125..834927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS04050 (SMID22_08280) coiA 827153..828106 (+) 954 WP_411865481.1 competence protein CoiA Machinery gene
  ACLV7W_RS04055 (SMID22_08290) pepF 828125..829927 (+) 1803 WP_411865482.1 oligoendopeptidase F Regulator
  ACLV7W_RS04060 (SMID22_08300) - 829929..830642 (+) 714 WP_261105932.1 O-methyltransferase -
  ACLV7W_RS04065 (SMID22_08310) prsA 830709..831647 (+) 939 WP_000727954.1 peptidylprolyl isomerase PrsA -
  ACLV7W_RS04070 (SMID22_08320) ftsW 831808..833031 (+) 1224 WP_033684998.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69882.85 Da        Isoelectric Point: 4.5731

>NTDB_id=1170442 ACLV7W_RS04055 WP_411865482.1 828125..829927(+) (pepF) [Streptococcus mitis isolate S. mitis D22]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKELTEQLETVAQYEGHLLDSADSLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEKQYADFLEAQPKLQVYQHYFDKLLQGKDHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKSREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYQEALK
KAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGMA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1170442 ACLV7W_RS04055 WP_411865482.1 828125..829927(+) (pepF) [Streptococcus mitis isolate S. mitis D22]
ATGGTATTACAAAGACATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATTTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGAGTTAACAGAACAATTGGAGACAGTAGCCCAGTATGAAGGCCATCTCTTGGATAGTGCGGATAGCC
TACTCGAAATTACTGAATTTTCTCTTGAGATGGAACGCCAAATGGAGAAGCTTTACGTTTATGCTCATATGAAAAATGAC
CAGGACACACGTGAAGCCAAGTATCAAGAGTACTATGCTAAGGCAATGACCCTCTACAGCCAGCTGGACCAAGCCTTTTC
ATTCTATGAGCCTGAATTTATGGAAATTAGTGAAAAGCAGTATGCTGACTTTTTAGAGGCTCAACCAAAATTGCAGGTTT
ATCAACACTATTTTGACAAACTTTTACAAGGAAAAGACCACGTTTTGTCACAACGTGAAGAAGAATTATTGGCTGGAGCT
GGAGAAATTTTTGGTTCGGCAAGTGAAACCTTCGCTATCCTGGACAATGCGGATATTGTGTTCCCTTATGTCCTCGACGA
TGATGGTAAGGAAGTTCAGCTCTCTCATGGGACTTACACACGTTTGATGGAGTCTAAAAGTCGTGAGGTACGCCGTGGTG
CCTATCAAGCCCTTTATGCGACTTATGAACAATTCCAACATACCTATGCCAAAACTTTGCAAACCAATGTTAAGGTGCAA
AACTACCGTGCCAAAGTTCGCAACTACAAGAGTGCTCGTCATGCAGCCCTAGCAGCGAATTTTGTTCCAGAAAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCACTTGCCACTCTTGCATCGCTATCTTGAGCTTCGTTCAAAAATCTTGGGTA
TTTCCGACCTAAAGATGTATGATGTCTACACACCGCTTTCATCTGTTGAATACAGTTTTACCTACCAAGAAGCCTTGAAA
AAGGCAGAAGATGCCTTGGCAGTCTTGGGTGAAGATTACTTGAGCCGTGTTAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTACGAAAATCAAGGCAAGCGTTCAGGTGCCTACTCTGGCGGTTCTTACGATACCAATGCCTTTATGCTCCTAAACT
GGCAGGACAATCTAGATAATCTCTTTACCCTTGTCCATGAAACAGGTCACAGTATGCACTCAAGCTATACTCGTGAAACG
CAGCCTTATGTTTATGGAGATTACTCTATCTTCTTAGCTGAGATTGCCTCAACTACCAATGAGAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGATGACGCAACGCGCTTTGCTATTCTCAATAACTTCCTAGACGGTTTCCGTGGAACAGTTT
TCCGCCAAACTCAATTCGCTGAGTTTGAACACGCCATTCACCAAGCGGATCAAAAAGGTGAAGTCTTGACAAGTGATTTC
CTAAATAAACTCTACGCAGACCTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGATAATCCTGAAATCCAATACGAGTG
GGCACGCATTCCACACTTCTACTATAACTACTATGTATATCAATATTCAACAGGCTTTGCAGCAGCTTCAGCTCTGGCTG
AAAAGATTGTCCATGGTAGTCAAGAAGACCGTGACCGTTATATTGATTACCTCAAGGCAGGTAAATCTGACTATCCACTT
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGACTATCTCAACGATGCCTTTGCAGTCTTTGAACGTCGTTT
AAATGAGTTTGAAGCACTTGTTGAAAAATTGGGAATGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.282

99.333

0.668

Multiple sequence alignment