Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACLV7D_RS10120 Genome accession   NZ_OZ217345
Coordinates   2127968..2128630 (-) Length   220 a.a.
NCBI ID   WP_218764583.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2122968..2133630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS10100 (SMIF22_20040) - 2123485..2124663 (-) 1179 WP_218764584.1 acetyl-CoA C-acetyltransferase -
  ACLV7D_RS10105 (SMIF22_20050) - 2124681..2125526 (-) 846 WP_050242833.1 3-hydroxybutyryl-CoA dehydrogenase -
  ACLV7D_RS10110 (SMIF22_20060) - 2125608..2126816 (-) 1209 WP_050242834.1 acyl-CoA dehydrogenase family protein -
  ACLV7D_RS10115 (SMIF22_20070) hpf 2127340..2127888 (-) 549 WP_049513313.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACLV7D_RS10120 (SMIF22_20080) comFC/cflB 2127968..2128630 (-) 663 WP_218764583.1 ComF family protein Machinery gene
  ACLV7D_RS10125 (SMIF22_20090) comFA/cflA 2128627..2129925 (-) 1299 WP_218764582.1 DEAD/DEAH box helicase Machinery gene
  ACLV7D_RS10130 (SMIF22_20100) - 2129981..2130616 (+) 636 WP_218764581.1 YigZ family protein -
  ACLV7D_RS10135 - 2130710..2130805 (+) 96 Protein_1955 PH domain-containing protein -
  ACLV7D_RS10140 (SMIF22_20110) cysK 2130902..2131828 (+) 927 WP_218764580.1 cysteine synthase A -
  ACLV7D_RS10145 (SMIF22_20130) tsf 2131950..2132990 (-) 1041 WP_000808091.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25236.21 Da        Isoelectric Point: 7.7141

>NTDB_id=1170401 ACLV7D_RS10120 WP_218764583.1 2127968..2128630(-) (comFC/cflB) [Streptococcus mitis isolate S. mitis F22]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDFTFERIGEENCPNCMKTGLSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKIFASFLSAELKKYKEYQFVVIPLSPERLLERGFNQVEGLVEAAGFSFQDLLEKREERASSS
KSRSERLATELPFFIKSGVRIPKKILLIDDIYTTGTTINRVKKLLEEAGAEDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1170401 ACLV7D_RS10120 WP_218764583.1 2127968..2128630(-) (comFC/cflB) [Streptococcus mitis isolate S. mitis F22]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTGCTTCTGAGGAATGATGACTC
CTGTCTTTGTTCAGACTGTGATTTTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGGTTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTATAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAATTTGATGGAGATTTCCTTTTAAGAAAAATTTTCGCTTCATTTTTAAGTGC
GGAGTTAAAAAAGTACAAAGAGTATCAATTTGTAGTCATTCCCCTAAGTCCTGAAAGATTGCTCGAGAGGGGATTTAACC
AGGTTGAAGGTTTAGTTGAAGCAGCAGGGTTCTCTTTTCAAGACTTACTAGAGAAAAGAGAAGAACGAGCCAGTTCTTCT
AAAAGTCGCTCAGAGCGCTTGGCGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCCGTATTCCTAAGAAAATCCTACT
TATAGATGATATTTATACTACAGGAACAACTATAAATCGTGTGAAGAAACTGCTGGAAGAAGCTGGTGCTGAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

92.727

100

0.927
  comFC/cflB Streptococcus pneumoniae Rx1

92.273

100

0.923
  comFC/cflB Streptococcus pneumoniae D39

92.273

100

0.923
  comFC/cflB Streptococcus pneumoniae R6

92.273

100

0.923
  comFC/cflB Streptococcus mitis SK321

92.273

100

0.923
  comFC/cflB Streptococcus mitis NCTC 12261

92.273

100

0.923

Multiple sequence alignment