Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | ACLV7D_RS01120 | Genome accession | NZ_OZ217345 |
| Coordinates | 213305..214258 (+) | Length | 317 a.a. |
| NCBI ID | WP_218764767.1 | Uniprot ID | - |
| Organism | Streptococcus mitis isolate S. mitis F22 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 208305..219258
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLV7D_RS01075 (SMIF22_02080) | - | 208475..208840 (+) | 366 | WP_045606653.1 | DUF1033 family protein | - |
| ACLV7D_RS01080 (SMIF22_02090) | comGA/cglA/cilD | 208917..209858 (+) | 942 | WP_164226419.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACLV7D_RS01085 (SMIF22_02100) | comGB/cglB | 209806..210822 (+) | 1017 | WP_112445357.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACLV7D_RS01090 (SMIF22_02110) | comGC/cglC | 210824..211147 (+) | 324 | WP_112445359.1 | comG operon protein ComGC | Machinery gene |
| ACLV7D_RS01095 (SMIF22_02120) | comGD/cglD | 211110..211544 (+) | 435 | WP_164226418.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACLV7D_RS01100 (SMIF22_02130) | comGE/cglE | 211507..211809 (+) | 303 | WP_191994109.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| ACLV7D_RS01105 (SMIF22_02140) | comGF/cglF | 211772..212233 (+) | 462 | WP_112445365.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ACLV7D_RS01110 (SMIF22_02150) | comGG/cglG | 212211..212624 (+) | 414 | WP_112445367.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ACLV7D_RS01115 (SMIF22_02160) | - | 212657..213244 (+) | 588 | WP_164226417.1 | class I SAM-dependent methyltransferase | - |
| ACLV7D_RS01120 (SMIF22_02170) | comYH | 213305..214258 (+) | 954 | WP_218764767.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ACLV7D_RS01125 (SMIF22_02180) | - | 214308..215498 (+) | 1191 | WP_218764766.1 | acetate kinase | - |
| ACLV7D_RS01130 (SMIF22_02190) | rnpA | 215646..216017 (+) | 372 | WP_112445373.1 | ribonuclease P protein component | - |
| ACLV7D_RS01135 (SMIF22_02200) | - | 215992..216816 (+) | 825 | WP_218764765.1 | membrane protein insertase YidC | - |
| ACLV7D_RS01140 (SMIF22_02210) | jag | 216834..217823 (+) | 990 | WP_218764764.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| ACLV7D_RS01145 (SMIF22_02220) | - | 217874..218497 (+) | 624 | WP_218764763.1 | ribonuclease P | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35609.84 Da Isoelectric Point: 4.3700
>NTDB_id=1170338 ACLV7D_RS01120 WP_218764767.1 213305..214258(+) (comYH) [Streptococcus mitis isolate S. mitis F22]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETKLKQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMSDVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEASLVAIISLPENLFANANQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETKLKQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMSDVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEASLVAIISLPENLFANANQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=1170338 ACLV7D_RS01120 WP_218764767.1 213305..214258(+) (comYH) [Streptococcus mitis isolate S. mitis F22]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
TTTTTATGATGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACGAAGCTAAAACAGGTCAAAGAGAACAATC
AAGCCCTTAAGCGTTTAGCGCTTCGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAAGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGCTATTGCCTTACTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGCATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGCTAAAA
AAGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGTCAGATGTGATTGGTTTGCAG
GCTGGTTTTGTTCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGTCATCAAGTTGCTTCTAGTCAAGAACATACCTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTATCTCAAATCAGATGGCTACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTGAAAGGCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATCATCAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAACCAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
TTTTTATGATGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACGAAGCTAAAACAGGTCAAAGAGAACAATC
AAGCCCTTAAGCGTTTAGCGCTTCGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAAGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGCTATTGCCTTACTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGCATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGCTAAAA
AAGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGTCAGATGTGATTGGTTTGCAG
GCTGGTTTTGTTCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGTCATCAAGTTGCTTCTAGTCAAGAACATACCTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTATCTCAAATCAGATGGCTACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTGAAAGGCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATCATCAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAACCAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
54.633 |
98.738 |
0.539 |
| comYH | Streptococcus mutans UA159 |
54.313 |
98.738 |
0.536 |