Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   ACLV7D_RS00115 Genome accession   NZ_OZ217345
Coordinates   22301..22537 (+) Length   78 a.a.
NCBI ID   WP_173224583.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 17301..27537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS00110 - 21838..22070 (-) 233 Protein_15 transposase -
  ACLV7D_RS00115 (SMIF22_00190) comW 22301..22537 (+) 237 WP_173224583.1 sigma(X)-activator ComW Regulator
  ACLV7D_RS00120 (SMIF22_00200) - 22768..24054 (+) 1287 WP_173251393.1 adenylosuccinate synthase -
  ACLV7D_RS00125 (SMIF22_00220) tadA 24255..24722 (+) 468 WP_164227012.1 tRNA adenosine(34) deaminase TadA -
  ACLV7D_RS00135 (SMIF22_00240) - 24909..25352 (+) 444 WP_000701983.1 dUTP diphosphatase -
  ACLV7D_RS00140 (SMIF22_00250) - 25303..25869 (+) 567 WP_218764136.1 histidine phosphatase family protein -
  ACLV7D_RS00145 (SMIF22_00260) radA 25883..27244 (+) 1362 WP_411865968.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9791.32 Da        Isoelectric Point: 7.2368

>NTDB_id=1170327 ACLV7D_RS00115 WP_173224583.1 22301..22537(+) (comW) [Streptococcus mitis isolate S. mitis F22]
MLQKIYEQMADFYRNIEEEYGTVFGDNFDWEHFHFKFLIYYLVRYGIGCRRDFIVYHYRVSYRLYLEKLIMKQGFVAC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=1170327 ACLV7D_RS00115 WP_173224583.1 22301..22537(+) (comW) [Streptococcus mitis isolate S. mitis F22]
ATGTTACAAAAAATTTATGAGCAGATGGCGGATTTTTATAGAAATATTGAAGAAGAGTATGGTACTGTATTTGGTGATAA
TTTTGACTGGGAACATTTTCATTTTAAATTTTTGATTTATTATTTAGTTCGATATGGCATTGGGTGTCGTAGGGATTTTA
TTGTTTACCATTATCGTGTTTCTTATCGTTTGTATCTTGAAAAATTGATAATGAAACAAGGTTTTGTTGCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis SK321

84.615

100

0.846
  comW Streptococcus mitis NCTC 12261

84.416

98.718

0.833
  comW Streptococcus pneumoniae Rx1

83.333

100

0.833
  comW Streptococcus pneumoniae D39

83.333

100

0.833
  comW Streptococcus pneumoniae R6

83.333

100

0.833
  comW Streptococcus pneumoniae TIGR4

83.333

100

0.833

Multiple sequence alignment